CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY16196
CDY45004
CDY46437
CDY50732

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08455.1	CDY16196	AT1G26830.1	15749712
AT4G08455.1	CDY45004	AT1G26830.1	15749712
AT4G08455.1	CDY46437	AT1G26830.1	15749712
AT4G08455.1	CDY50732	AT1G26830.1	15749712

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34002	Canola	cytosol	25.84	97.18
CDY34003	Canola	nucleus	57.68	89.02
AT4G08455.1	Thale cress	cytosol	84.27	83.33
VIT_18s0001g01590.t01	Wine grape	cytosol	68.91	69.7
GSMUA_Achr8P32570_001	Banana	cytosol	56.93	61.54
Os07t0258700-01	Rice	cytosol	56.18	60.98
Solyc02g032510.2.1	Tomato	cytosol	61.8	59.14
OQU88783	Sorghum	cytosol	53.93	56.25
TraesCS6A01G046100.1	Wheat	cytosol	31.09	56.08
Zm00001d019328_P003	Maize	cytosol	54.68	54.48
TraesCS6B01G062000.1	Wheat	cytosol	50.94	53.75
KRH53314	Soybean	cytosol, mitochondrion	52.06	53.46
TraesCS6A01G045900.1	Wheat	cytosol	51.31	53.31
TraesCS6D01G053100.1	Wheat	cytosol	51.31	53.31
KRH64603	Soybean	cytosol	50.94	52.71
HORVU6Hr1G009330.1	Barley	cytosol	51.69	51.88
CDX97765	Canola	cytosol	11.98	27.12
CDY24905	Canola	cytosol	19.85	25.36
CDX90048	Canola	cytosol	19.48	24.88
CDY07606	Canola	cytosol	19.48	24.88
CDY24906	Canola	cytosol	12.36	24.81
CDY31600	Canola	cytosol	19.85	24.54
CDY23907	Canola	cytosol	18.35	24.5
CDX79987	Canola	cytosol	17.6	23.62
CDY07607	Canola	cytosol	19.85	23.56
CDY23905	Canola	cytosol	17.6	23.27
CDY51160	Canola	cytosol	17.6	23.15
CDX79986	Canola	cytosol	16.85	22.96
CDY07220	Canola	cytosol	16.85	22.28
CDY24907	Canola	cytosol	19.48	21.58
CDY08283	Canola	cytosol	17.23	21.2
CDY19060	Canola	mitochondrion	13.11	20.47
CDY32004	Canola	cytosol	14.61	19.6
CDY27231	Canola	cytosol	20.6	19.43
CDX72156	Canola	cytosol	20.6	19.43
CDY52933	Canola	cytosol	16.85	15.25
CDY32006	Canola	nucleus	11.24	12.99
CDX67639	Canola	cytosol	16.48	8.58

Protein Annotations

EnsemblPlants:CDX83137	EnsemblPlantsGene:GSBRNA2T00138659001	Gene3D:1.25.40.420	Gene3D:3.30.710.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:BTB/POZ_dom	InterPro:IPR000210	InterPro:SKP1/BTB/POZ_sf	ncoils:Coil	PANTHER:PTHR24413
PANTHER:PTHR24413:SF131	PFAM:PF00651	PFscan:PS50097	ProteinID:CDX83137	ProteinID:CDX83137.1	SEG:seg
SMART:SM00225	SUPFAM:SSF54695	UniParc:UPI0004EEB9F3	MapMan:35.1	:	:

Description

BnaA03g23690D

Coordinates

chrLK031832:-:6579..7917

Molecular Weight (calculated)

30214.6 Da

IEP (calculated)

4.927

GRAVY (calculated)

-0.476

Length

267 amino acids

Sequence
(BLAST)

001: MRRTHRCVQS ESSESGSESD SDTSMRCISC REEYLPRDAG TCKECYVEAG ETEEELKREI EDLKAKVTFL RLSSSLDHGN SSSSRSFTDV VLIASEDSAT
101: SPPVPAHKAV LVSRSPVFRA MLENEMEESR SGTIKISDIS YDTLRTFVYY LYTAEACLDE QMACDLLVMS EKYQVKHLKS YCEKFLVTKL NPDNSLMTYA
201: FAHQHNAKHV RDAALLQIIE NMENVTKREE YMELVEKEPR LVVEIYEAYL SKQVNTAAAG TSTSKTC

Best Arabidopsis Sequence Match ( AT4G08455.1 )
(BLAST)

001: MRRHHHRCQI GSDSETGSES DSDTDTPMRC ISCREEYLPR NAGTCKECYV EAGETEEELK REIDDLKAKV AFLRLSSSLD HGTSSTSRSF TDVVLIASED
101: NAGSPPIPAH KSVLVSRSPV FKAMLENEME ESLSGTIKIS DVSYDALRTF VYYLYTAEAC LDEQMACDLL VMSEKYQVKH LKSYCERFLV TKLSPDNSLM
201: TYAFAHQHNA KHVLDAALSQ IVENMDKLTK REEYMELVEK DPRLIVEIYE AYLSKQVNTA AGGTSTSKTS

Arabidopsis Description

BTB/POZ domain-containing protein [Source:TAIR;Acc:AT4G08455]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.