CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79986	Canola	cytosol	88.12	90.82
CDY24906	Canola	cytosol	37.13	56.39
CDX97765	Canola	cytosol	31.19	53.39
CDY24905	Canola	cytosol	53.96	52.15
CDY07606	Canola	cytosol	52.97	51.2
CDY23907	Canola	cytosol	48.02	48.5
CDY07607	Canola	cytosol	53.96	48.44
CDY08283	Canola	cytosol	51.98	48.39
CDX79987	Canola	cytosol	47.52	48.24
CDY19060	Canola	mitochondrion	39.11	46.2
CDY31600	Canola	cytosol	49.01	45.83
CDY24907	Canola	cytosol	53.47	44.81
CDY32004	Canola	cytosol	36.63	37.19
CDY51160	Canola	cytosol	34.16	33.99
CDY07220	Canola	cytosol	33.66	33.66
CDX90048	Canola	cytosol	34.16	33.01
CDX72156	Canola	cytosol	34.16	24.38
CDY27231	Canola	cytosol	34.16	24.38
GSMUA_Achr5P29570_001	Banana	cytosol	30.69	22.06
CDY52933	Canola	cytosol	32.18	22.03
Zm00001d036840_P001	Maize	cytosol	29.7	20.69
TraesCS4D01G116200.2	Wheat	cytosol	28.71	20.28
TraesCS4A01G196800.2	Wheat	cytosol	28.22	19.93
EES09114	Sorghum	cytosol	27.23	19.86
CDY34002	Canola	cytosol	6.93	19.72
HORVU4Hr1G022110.3	Barley	cytosol	27.72	19.65
Os12t0111500-02	Rice	cytosol	26.73	19.64
TraesCS4B01G118500.1	Wheat	cytosol	27.72	19.58
Os11t0111900-01	Rice	cytosol	26.24	19.27
CDX83137	Canola	cytosol	23.27	17.6
CDX67639	Canola	cytosol	38.12	15.01
CDY34003	Canola	nucleus	11.88	13.87
CDY32006	Canola	nucleus	15.35	13.42

Protein Annotations

EnsemblPlants:CDY23905	EnsemblPlantsGene:GSBRNA2T00024345001	Gene3D:1.25.40.420	Gene3D:3.30.710.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:BTB/POZ_dom	InterPro:IPR000210	InterPro:SKP1/BTB/POZ_sf	PANTHER:PTHR24413	PANTHER:PTHR24413:SF164
PFAM:PF00651	PFscan:PS50097	ProteinID:CDY23905	ProteinID:CDY23905.1	SMART:SM00225	SUPFAM:SSF54695
UniParc:UPI0004EB05D5	UniProt:A0A078GBR8	MapMan:35.1	:	:	:

Description

BnaC04g01320DBnaC04g01320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GBR8]

Coordinates

chrLK032150:+:585753..586454

Molecular Weight (calculated)

22704.2 Da

IEP (calculated)

5.949

GRAVY (calculated)

-0.122

Length

202 amino acids

Sequence
(BLAST)

001: MATDVSSSGF AKILKQKWHT DLLLKAGDSN GFAAISAHKL VIAARSEVFK KMLESKATKA SSDQTLIFSE MRHEELETLV EFMYNDHGLV SSSKLKKHVR
101: SLYLAAQRYE IPHLRDLCRN ELISSLSSSN ALDVLELSQV PLDKPLTDAV LSFIARNINT FLDSCEFKMF VARNPNLAVE ITKAFLNPVM IPVEYESDDD
201: DY

Best Arabidopsis Sequence Match ( AT2G40450.1 )
(BLAST)

001: MATQSNKEAF LGGFKKLLNE QWQADVRLKA GDSDETTSIF AHKLVLVARS EVFKKILESD EFKASSKQME TVTLSEMKHE ELEAFVEFIY RVDGSICSAS
101: LKKHARSLFH AADKYEIPHL RDLCRNELIS SLNSSNALSI LELAQIPFDK ALNDPAFTTI ITNISTIASG DEFKLFVANH PNLAVDIMKA SITRLSTSRK
201: ICGYCNRYY

Arabidopsis Description

Putative BTB/POZ domain-containing protein At2g40450 [Source:UniProtKB/Swiss-Prot;Acc:O22890]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.