CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79987	Canola	cytosol	47.37	40.7
CDY24905	Canola	cytosol	49.71	40.67
CDY07606	Canola	cytosol	49.71	40.67
CDY23907	Canola	cytosol	47.37	40.5
CDY31600	Canola	cytosol	49.71	39.35
CDY08283	Canola	cytosol	49.71	39.17
CDY23905	Canola	cytosol	46.2	39.11
CDY24906	Canola	cytosol	30.41	39.1
CDX79986	Canola	cytosol	43.86	38.27
CDY07607	Canola	cytosol	50.29	38.22
CDX97765	Canola	cytosol	23.98	34.75
CDY24907	Canola	cytosol	47.95	34.02
CDY32004	Canola	cytosol	39.18	33.67
CDX90048	Canola	cytosol	30.99	25.36
CDY07220	Canola	cytosol	28.66	24.26
CDY51160	Canola	cytosol	28.66	24.14
GSMUA_Achr5P29570_001	Banana	cytosol	30.99	18.86
CDY34002	Canola	cytosol	7.6	18.31
CDY52933	Canola	cytosol	30.41	17.63
CDX72156	Canola	cytosol	28.66	17.31
CDY27231	Canola	cytosol	28.66	17.31
HORVU4Hr1G022110.3	Barley	cytosol	28.07	16.84
TraesCS4D01G116200.2	Wheat	cytosol	28.07	16.78
TraesCS4A01G196800.2	Wheat	cytosol	27.49	16.43
Os11t0111900-01	Rice	cytosol	26.32	16.36
Os12t0111500-02	Rice	cytosol	26.32	16.36
EES09114	Sorghum	cytosol	25.73	15.88
Zm00001d036840_P001	Maize	cytosol	26.9	15.86
TraesCS4B01G118500.1	Wheat	cytosol	26.32	15.73
CDX67639	Canola	cytosol	39.77	13.26
CDX83137	Canola	cytosol	20.47	13.11
CDY32006	Canola	nucleus	16.96	12.55
CDY34003	Canola	nucleus	7.02	6.94

Protein Annotations

EnsemblPlants:CDY19060	EnsemblPlantsGene:GSBRNA2T00006330001	Gene3D:1.25.40.420	Gene3D:3.30.710.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:BTB/POZ_dom	InterPro:IPR000210	InterPro:SKP1/BTB/POZ_sf	PANTHER:PTHR24413	PANTHER:PTHR24413:SF164
PFAM:PF00651	ProteinID:CDY19060	ProteinID:CDY19060.1	SUPFAM:SSF54695	UniParc:UPI0004EF4A16	UniProt:A0A078FXF6
MapMan:35.1	:	:	:	:	:

Description

BnaA04g18000DBnaA04g18000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FXF6]

Coordinates

chrLK032092:-:4654..5169

Molecular Weight (calculated)

19689.1 Da

IEP (calculated)

9.175

GRAVY (calculated)

-0.212

Length

171 amino acids

Sequence
(BLAST)

001: MGVGPILNFK KKLITGRPKK QIRKNPETFC CRGHHVMLKR SCETVTFSEL KHEELEALVK FIYSDGSGLS AKEKEHVRSL YVTADKYEIP HLRDLCRNEL
101: VKSLNLSNAL EVLELSLIPL DNALHDAAFC YIINNLKTIA NSLEFKLFAT RNTDLTVEII RAYMARRNIY Y

Best Arabidopsis Sequence Match ( AT5G48510.1 )
(BLAST)

001: MATPTNKEHF SGGLAKVLAE KWQVDVMLKA KNSDEGSAIS AHKLILASRS EVFKNMFELD EFKTSTKHVE TITLSEMKHE ELEAFVEFIC SDGSMLSANV
101: KQHARSLYLA ADKYEILHLR DLCRTELISS LSLLNSLDLL VLAQIPFDKV LNDESFSYIK NNISTIASSD EFKLFVAGNP NLAVEIMKVS LITLTLRCSS
201: CGSNHSLQGM YCCNCCRYGT LRLI

Arabidopsis Description

BTB/POZ domain-containing protein At5g48510 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV63]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.