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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • plastid 1
  • cytosol 3
  • plasma membrane 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:nucleus
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus, plasma membrane
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU3Hr1G098530.4
HORVU4Hr1G022110.3
HORVU6Hr1G075720.2

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G01640.1 HORVU4Hr1G022110.3 AT1G01640.1 21798944
AT1G01640.1 HORVU6Hr1G075720.2 AT1G26830.1 15772280
AT1G01640.1 HORVU3Hr1G098530.4 AT4G02570.1 15659098
AT1G01640.1 HORVU3Hr1G098530.4 AT4G02570.1 21798944
AT5G48510.1 HORVU6Hr1G075720.2 AT1G26830.1 15772280
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4D01G116200.2 Wheat cytosol 92.28 91.96
TraesCS4B01G118500.1 Wheat cytosol 92.28 91.96
TraesCS4A01G196800.2 Wheat cytosol 91.58 91.26
EES09114 Sorghum cytosol 63.51 65.34
Os12t0111500-02 Rice cytosol 61.4 63.64
Os11t0111900-01 Rice cytosol 61.05 63.27
Zm00001d036840_P001 Maize cytosol 61.75 60.69
GSMUA_Achr5P29570_001 Banana cytosol 47.02 47.69
VIT_13s0067g02290.t01 Wine grape cytosol, plastid 40.7 42.96
CDX90048 Canola cytosol 30.88 42.11
AT1G01640.1 Thale cress cytosol 29.47 40.58
KRH31216 Soybean cytosol, plastid 37.89 40.15
KRG97659 Soybean cytosol, plastid 37.19 39.41
PGSC0003DMT400071906 Potato cytosol 27.02 38.31
Bra033246.1-P Field mustard cytosol 28.07 38.28
Bra007229.1-P Field mustard cytosol 37.19 37.46
CDY27231 Canola cytosol 37.19 37.46
Solyc06g050860.2.1 Tomato cytosol 36.49 37.28
AT3G56230.1 Thale cress cytosol 36.84 37.23
CDX72156 Canola cytosol 36.84 37.1
PGSC0003DMT400097598 Potato cytosol 23.86 35.05
CDX97765 Canola cytosol 14.39 34.75
Solyc05g052290.1.1 Tomato cytosol 30.88 33.08
Bra037339.1-P Field mustard cytosol 22.11 31.03
CDY51160 Canola cytosol 22.11 31.03
Bra004569.1-P Field mustard cytosol 21.4 30.35
CDY07220 Canola cytosol 21.4 30.2
CDX79987 Canola cytosol 21.05 30.15
Bra021691.1-P Field mustard cytosol 20.7 29.35
CDY24906 Canola cytosol 13.68 29.32
AT2G40450.1 Thale cress cytosol 21.4 29.19
CDY32006 Canola nucleus 23.51 29.0
CDY23907 Canola cytosol 20.35 29.0
AT4G04090.1 Thale cress cytosol 19.3 28.65
Bra000185.1-P Field mustard cytosol 20.7 28.5
CDY19060 Canola mitochondrion 16.84 28.07
CDX79986 Canola cytosol 19.3 28.06
CDY23905 Canola cytosol 19.65 27.72
CDY08283 Canola cytosol 21.05 27.65
Bra000186.1-P Field mustard cytosol 19.65 26.79
CDY24905 Canola cytosol 19.65 26.79
CDY07606 Canola cytosol 19.65 26.79
CDY07607 Canola cytosol 21.05 26.67
Bra004570.1-P Field mustard cytosol 19.3 25.94
CDY31600 Canola cytosol 19.65 25.93
CDY32004 Canola cytosol 17.89 25.63
Bra037082.1-P Field mustard cytosol, nucleus, plastid 14.04 25.32
CDY24907 Canola cytosol 21.05 24.9
AT5G48510.1 Thale cress cytosol 17.89 22.77
AT2G05330.1 Thale cress cytosol 16.84 22.33
HORVU6Hr1G009330.1 Barley cytosol 19.3 20.68
Bra017002.1-P Field mustard cytosol 18.95 19.08
CDY52933 Canola cytosol 17.19 16.61
Bra021693.1-P Field mustard cytosol 20.35 14.65
CDX67639 Canola cytosol 25.96 14.43
Bra003233.1-P Field mustard cytosol 25.26 14.04
Protein Annotations
Gene3D:1.25.40.420Gene3D:3.30.710.10MapMan:35.1InterPro:BTB/POZ_domGO:GO:0003674GO:GO:0005488
GO:GO:0005515EnsemblPlantsGene:HORVU4Hr1G022110EnsemblPlants:HORVU4Hr1G022110.3InterPro:IPR000210UniProt:M0WJ12PFAM:PF00651
PFscan:PS50097PANTHER:PTHR24413PANTHER:PTHR24413:SF164InterPro:SKP1/BTB/POZ_sfSMART:SM00225SUPFAM:SSF54695
UniParc:UPI0002956579SEG:seg::::
Description
No Description!
Coordinates
chrchr4H:+:116837196..116839011
Molecular Weight (calculated)
30410.3 Da
IEP (calculated)
5.989
GRAVY (calculated)
-0.051
Length
285 amino acids
Sequence
(BLAST)
001: MDCCICGPMA AIYRPPRNTI CSPCYEGSKA IIAFLNDGEH AAGDGEGDRG LVNPRGLTKH TNVSTKGMRE AWQQMQEMRD REEVANQRAG FLEQGFGAAW
101: MEGAHTDIVV RPGSGPPIPA HKAILAARSE VFHHMLCSDE CKAAPAGGCV SLPELAHDEL SLFLAFLYTG TLDAAAAATT TSASERLLHA LLVAADKYDV
201: PFLGRACEAR LAAAVDPRNA LRTLEVADRV SSGGALKERA MCTVVEHAEQ VVFSDEYHDF AVRNAGLCVE ITRALLAKAA GAKMA
Best Arabidopsis Sequence Match ( AT3G56230.1 )
(BLAST)
001: MDCSICTTMP SILRPPRNTI CGSCYEGART TIALLKKLEG SKEDRHDKSN HNSTINNGSS ISSSPLFSCE PQPLEKVIKW MKNMKETEEE QKKRIVFLSS
101: FVSGFKEQLH ADILLKPGDD GPPIPAHRAL LASKSEIFKN ILDSDGCKTA PEYAITLQEL NSEQLQALLE FLYTGTLASD KLEKNVYALF IAADKYMIHY
201: LQELCEQYML SSLDISSVLN VLDVSDLGSS KTLKEACVGF VVRNMDDVVF SDKYEPFSQK NQHLCVEITR AFLMETRSKR RD
Arabidopsis Description
BTB/POZ domain-containing protein At3g56230 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYL9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.