Factsheet for Bra017002.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52933	Canola	cytosol	86.93	83.39
Bra037082.1-P	Field mustard	cytosol, nucleus, plastid	21.2	37.97
Bra021691.1-P	Field mustard	cytosol	26.86	37.81
Bra000185.1-P	Field mustard	cytosol	26.15	35.75
Bra033246.1-P	Field mustard	cytosol	25.44	34.45
Bra004570.1-P	Field mustard	cytosol	25.44	33.96
Bra004569.1-P	Field mustard	cytosol	23.67	33.33
Bra000186.1-P	Field mustard	cytosol	24.03	32.54
Bra037339.1-P	Field mustard	cytosol	20.49	28.57
Os11t0111900-01	Rice	cytosol	20.14	20.73
Os12t0111500-02	Rice	cytosol	20.14	20.73
Bra007229.1-P	Field mustard	cytosol	20.14	20.14
GSMUA_Achr5P29570_001	Banana	cytosol	19.79	19.93
EES09114	Sorghum	cytosol	19.43	19.86
HORVU4Hr1G022110.3	Barley	cytosol	19.08	18.95
TraesCS4B01G118500.1	Wheat	cytosol	19.08	18.88
TraesCS4D01G116200.2	Wheat	cytosol	19.08	18.88
TraesCS4A01G196800.2	Wheat	cytosol	18.73	18.53
Zm00001d036840_P001	Maize	cytosol	18.73	18.28
Bra021693.1-P	Field mustard	cytosol	24.73	17.68
Bra003233.1-P	Field mustard	cytosol	22.97	12.67

Protein Annotations

Gene3D:1.25.40.420	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	EnsemblPlantsGene:Bra017002	EnsemblPlants:Bra017002.1
EnsemblPlants:Bra017002.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210	UniProt:M4DKH2
PFAM:PF00651	PFscan:PS50097	PANTHER:PTHR24413	PANTHER:PTHR24413:SF164	InterPro:SKP1/BTB/POZ_sf	SUPFAM:SSF54695
UniParc:UPI0002544F3F	SEG:seg	:	:	:	:

Description

AT2G40450 (E=5e-031) | speckle-type POZ protein-related

Coordinates

chrA04:-:17189103..17191499

Molecular Weight (calculated)

31933.3 Da

IEP (calculated)

6.103

GRAVY (calculated)

-0.146

Length

283 amino acids

Sequence
(BLAST)

001: MSANKKSSPM QTERDAANKM EFDGALMNAT QWQAHVLLKA GDQTDAIAAH KLILGRYCVR VLYLAADKYE IPHLQDLCRN QLSGSMNTIN VFDVLDLAKI
101: HHDNILEHEV SKFIASHMEG VSSSSKFMSF VESDPALTVQ AIRGHVARSK VFIRNILESD DFKASLSKET ITLSEMKHDE LETFLEFIYN GSLSDTKMMQ
201: HVHVLYLAAD KYEIPHLQDL CRNQLIGSKN ITNVFDVLEL AKIHSDKILE HEVSEFIISH MEGISFSSKF MSFVDSNPAL TVQ

Best Arabidopsis Sequence Match ( AT1G01640.2 )
(BLAST)

001: MHTDVLVKPG EEAPPIPTHK AVLAARSKVF RNMLDSDECK TSPEESITLP DLSHDELKSL LEFLYSGNLK APYNQYRSLY LAADKYDISY LQDVCRNHFI
101: ASLSSRNVLD ILELASIPCD TILKDAAINH IVKHMEEVVV PMKYETFVQR NPDLSVEITR AYLRETKAKA KDHGAPLNGN TRPRIW

Arabidopsis Description

BTB/POZ domain-containing protein At1g01640 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ95]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.