Factsheet for Bra037082.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 2
cytosol 1
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra016291.1-P
Bra024680.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48510.1	Bra016291.1-P	AT1G26830.1	15772280
AT5G48510.1	Bra024680.1-P	AT1G26830.1	15772280

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08283	Canola	cytosol	83.54	60.83
Bra000186.1-P	Field mustard	cytosol	59.49	44.98
Bra000185.1-P	Field mustard	cytosol	55.7	42.51
AT5G48510.1	Thale cress	cytosol	59.49	41.96
Bra021691.1-P	Field mustard	cytosol	53.16	41.79
AT2G05330.1	Thale cress	cytosol	52.53	38.6
Bra004569.1-P	Field mustard	cytosol	44.94	35.32
Bra004570.1-P	Field mustard	cytosol	46.84	34.91
Bra033246.1-P	Field mustard	cytosol	34.18	25.84
Bra037339.1-P	Field mustard	cytosol	30.38	23.65
Bra017002.1-P	Field mustard	cytosol	37.97	21.2
Bra021693.1-P	Field mustard	cytosol	49.37	19.7
Bra007229.1-P	Field mustard	cytosol	30.38	16.96
GSMUA_Achr5P29570_001	Banana	cytosol	28.48	16.01
TraesCS4D01G116200.2	Wheat	cytosol	25.95	14.34
HORVU4Hr1G022110.3	Barley	cytosol	25.32	14.04
TraesCS4A01G196800.2	Wheat	cytosol	25.32	13.99
EES09114	Sorghum	cytosol	24.05	13.72
TraesCS4B01G118500.1	Wheat	cytosol	24.05	13.29
Zm00001d036840_P001	Maize	cytosol	22.15	12.07
Os12t0111500-02	Rice	cytosol	20.89	12.0
Os11t0111900-01	Rice	cytosol	20.25	11.64
Bra003233.1-P	Field mustard	cytosol	36.71	11.31

Protein Annotations

EnsemblPlants:Bra037082.1	EnsemblPlants:Bra037082.1-P	EnsemblPlantsGene:Bra037082	Gene3D:1.25.40.420	Gene3D:3.30.710.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:BTB/POZ_dom	InterPro:IPR000210	InterPro:SKP1/BTB/POZ_sf	PANTHER:PTHR24413
PANTHER:PTHR24413:SF164	PFAM:PF00651	SUPFAM:SSF54695	UniParc:UPI00025475D9	UniProt:M4F7M1	MapMan:35.1

Description

AT5G48510 (E=5e-048) | speckle-type POZ protein-related

Coordinates

chrA05:+:9858588..9859064

Molecular Weight (calculated)

17882.3 Da

IEP (calculated)

4.383

GRAVY (calculated)

-0.148

Length

158 amino acids

Sequence
(BLAST)

001: MLESDEVKTL AEQVETVTLS EMKKEELETF VEFMYSDGTM ISPKAKQNVQ SLYLAADKYE IPHLRDLCRN EMISSLDMSN ALDVLELAQI PFDNGLNEAA
101: FSYVKNNIST IASSEVFKLF VVSNPNLAWE IMKASVSQTS NIYSRACRNC GTYCLYCR

Best Arabidopsis Sequence Match ( AT2G05330.2 )
(BLAST)

001: MLESDEFKTS AKQVGTITLL EMKQEELEAF VEFLYSDGSM LSSKVKQHAR ALYRAADKYE ILRLRELCRS ELISSLNSTN SLNLLELAQI PFDKVLNDAA
101: LSYIKTNELM FPSFDEFKLF VDNYPNLAVE VMMASLTRTP STSCSRCGLI TYHNQTGTSC CSCGFDYPRR S

Arabidopsis Description

Putative BTB/POZ domain-containing protein At2g05330 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ29]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.