Factsheet for TraesCS4D01G116200.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G457400.1
TraesCS3B01G497300.1
TraesCS3D01G450200.1
TraesCS4A01G196800.2
TraesCS4B01G118500.1
TraesCS4D01G116200.2
TraesCS6A01G306600.1
TraesCS6B01G335200.1
TraesCS6D01G285800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01640.1	TraesCS4A01G196800.2	AT1G01640.1	21798944
AT1G01640.1	TraesCS4B01G118500.1	AT1G01640.1	21798944
AT1G01640.1	TraesCS4D01G116200.2	AT1G01640.1	21798944
AT1G01640.1	TraesCS6A01G306600.1	AT1G26830.1	15772280
AT1G01640.1	TraesCS6B01G335200.1	AT1G26830.1	15772280
AT1G01640.1	TraesCS6D01G285800.1	AT1G26830.1	15772280
AT1G01640.1	TraesCS3A01G457400.1	AT4G02570.1	15659098
AT1G01640.1	TraesCS3B01G497300.1	AT4G02570.1	15659098
AT1G01640.1	TraesCS3D01G450200.1	AT4G02570.1	15659098
AT1G01640.1	TraesCS3A01G457400.1	AT4G02570.1	21798944
AT1G01640.1	TraesCS3B01G497300.1	AT4G02570.1	21798944
AT1G01640.1	TraesCS3D01G450200.1	AT4G02570.1	21798944
AT5G48510.1	TraesCS6A01G306600.1	AT1G26830.1	15772280
AT5G48510.1	TraesCS6B01G335200.1	AT1G26830.1	15772280
AT5G48510.1	TraesCS6D01G285800.1	AT1G26830.1	15772280

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G196800.2	Wheat	cytosol	96.5	96.5
TraesCS4B01G118500.1	Wheat	cytosol	96.15	96.15
HORVU4Hr1G022110.3	Barley	cytosol	91.96	92.28
EES09114	Sorghum	cytosol	63.29	65.34
Os12t0111500-02	Rice	cytosol	61.54	64.0
Os11t0111900-01	Rice	cytosol	61.19	63.64
Zm00001d036840_P001	Maize	cytosol	61.89	61.03
GSMUA_Achr5P29570_001	Banana	cytosol	48.6	49.47
VIT_13s0067g02290.t01	Wine grape	cytosol, plastid	40.56	42.96
CDX90048	Canola	cytosol	31.12	42.58
AT1G01640.1	Thale cress	cytosol	29.72	41.06
PGSC0003DMT400071906	Potato	cytosol	28.32	40.3
KRH31216	Soybean	cytosol, plastid	37.76	40.15
Bra007229.1-P	Field mustard	cytosol	39.16	39.58
CDY27231	Canola	cytosol	39.16	39.58
KRG97659	Soybean	cytosol, plastid	37.06	39.41
CDX72156	Canola	cytosol	38.81	39.22
Solyc06g050860.2.1	Tomato	cytosol	38.11	39.07
AT3G56230.1	Thale cress	cytosol	38.11	38.65
Bra033246.1-P	Field mustard	cytosol	27.97	38.28
PGSC0003DMT400097598	Potato	cytosol	24.83	36.6
CDX97765	Canola	cytosol	15.04	36.44
Solyc05g052290.1.1	Tomato	cytosol	31.47	33.83
CDY24906	Canola	cytosol	14.69	31.58
Bra037339.1-P	Field mustard	cytosol	22.38	31.53
CDY51160	Canola	cytosol	22.38	31.53
Bra004569.1-P	Field mustard	cytosol	22.03	31.34
CDX79987	Canola	cytosol	21.68	31.16
CDY07220	Canola	cytosol	21.68	30.69
CDY23907	Canola	cytosol	20.98	30.0
Bra000185.1-P	Field mustard	cytosol	21.68	29.95
Bra021691.1-P	Field mustard	cytosol	20.98	29.85
AT2G40450.1	Thale cress	cytosol	21.33	29.19
CDX79986	Canola	cytosol	19.93	29.08
CDY23905	Canola	cytosol	20.28	28.71
AT4G04090.1	Thale cress	cytosol	19.23	28.65
CDY32006	Canola	nucleus	23.08	28.57
CDY07606	Canola	cytosol	20.63	28.23
CDY24905	Canola	cytosol	20.63	28.23
Bra000186.1-P	Field mustard	cytosol	20.63	28.23
CDY08283	Canola	cytosol	21.33	28.11
CDY19060	Canola	mitochondrion	16.78	28.07
CDY07607	Canola	cytosol	22.03	28.0
Bra004570.1-P	Field mustard	cytosol	19.93	26.89
CDY24907	Canola	cytosol	22.38	26.56
Bra037082.1-P	Field mustard	cytosol, nucleus, plastid	14.34	25.95
CDY31600	Canola	cytosol	19.58	25.93
CDY32004	Canola	cytosol	17.83	25.63
AT5G48510.1	Thale cress	cytosol	18.18	23.21
AT2G05330.1	Thale cress	cytosol	16.43	21.86
TraesCS6D01G053100.1	Wheat	cytosol	19.23	21.4
Bra017002.1-P	Field mustard	cytosol	18.88	19.08
CDY52933	Canola	cytosol	17.13	16.61
Bra021693.1-P	Field mustard	cytosol	20.63	14.9
CDX67639	Canola	cytosol	26.22	14.62
Bra003233.1-P	Field mustard	cytosol	25.87	14.43

Protein Annotations

EnsemblPlants:TraesCS4D01G116200.2	EnsemblPlantsGene:TraesCS4D01G116200	Gene3D:1.25.40.420	Gene3D:3.30.710.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:BTB/POZ_dom	InterPro:IPR000210	InterPro:SKP1/BTB/POZ_sf	PANTHER:PTHR24413	PANTHER:PTHR24413:SF164
PFAM:PF00651	PFscan:PS50097	SEG:seg	SMART:SM00225	SUPFAM:SSF54695	TIGR:cd14821
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:97376231..97377632

Molecular Weight (calculated)

30424.3 Da

IEP (calculated)

6.175

GRAVY (calculated)

-0.117

Length

286 amino acids

Sequence
(BLAST)

001: MDCCICGPMA AIYRPPRNTI CSPCYEGSKA IIAFLNDGDH AAGDGQGDRG LVTPRGLIKH SDSSTKQGMR EAWEQMKEMR DREEAANQRA GFLEQGFGAA
101: WMEGAHTDIL VKPGNGPPIP AHKAILAARS EVFHHMLCSD ECKAAPAGGC VSLPELAHDE LSLFLAFLYT GTLDAAASAT ATSASERRLH ALLVAADKYD
201: VPFLGRACEA RLAAAMDPAN ALRTLEVADR VSSGGALKER AMGTVVEHAE QVVFSEEYHD FAVRNAGLCV EITRALLAKA AGAKKA

Best Arabidopsis Sequence Match ( AT3G56230.1 )
(BLAST)

001: MDCSICTTMP SILRPPRNTI CGSCYEGART TIALLKKLEG SKEDRHDKSN HNSTINNGSS ISSSPLFSCE PQPLEKVIKW MKNMKETEEE QKKRIVFLSS
101: FVSGFKEQLH ADILLKPGDD GPPIPAHRAL LASKSEIFKN ILDSDGCKTA PEYAITLQEL NSEQLQALLE FLYTGTLASD KLEKNVYALF IAADKYMIHY
201: LQELCEQYML SSLDISSVLN VLDVSDLGSS KTLKEACVGF VVRNMDDVVF SDKYEPFSQK NQHLCVEITR AFLMETRSKR RD

Arabidopsis Description

BTB/POZ domain-containing protein At3g56230 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYL9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.