Factsheet for PGSC0003DMT400071906

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g050860.2.1	Tomato	cytosol	96.52	69.53
PGSC0003DMT400097598	Potato	cytosol	60.2	62.37
VIT_13s0067g02290.t01	Wine grape	cytosol, plastid	71.64	53.33
KRH31216	Soybean	cytosol, plastid	55.72	41.64
KRG97659	Soybean	cytosol, plastid	55.22	41.26
Bra007229.1-P	Field mustard	cytosol	56.72	40.28
CDY27231	Canola	cytosol	56.72	40.28
CDX72156	Canola	cytosol	56.72	40.28
AT3G56230.1	Thale cress	cytosol	52.74	37.59
GSMUA_Achr5P29570_001	Banana	cytosol	51.74	37.01
Os11t0111900-01	Rice	cytosol	40.8	29.82
Os12t0111500-02	Rice	cytosol	40.8	29.82
TraesCS4D01G116200.2	Wheat	cytosol	40.3	28.32
TraesCS4A01G196800.2	Wheat	cytosol	39.8	27.97
TraesCS4B01G118500.1	Wheat	cytosol	39.3	27.62
Zm00001d036840_P001	Maize	cytosol	39.8	27.59
EES09114	Sorghum	cytosol	37.81	27.44
HORVU4Hr1G022110.3	Barley	cytosol	38.31	27.02
CDY32006	Canola	nucleus	29.35	25.54

Protein Annotations

EnsemblPlants:PGSC0003DMT400071906	EnsemblPlantsGene:PGSC0003DMG400027977	Gene3D:1.25.40.420	Gene3D:3.30.710.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:BTB/POZ_dom	InterPro:IPR000210	InterPro:SKP1/BTB/POZ_sf	PANTHER:PTHR24413	PANTHER:PTHR24413:SF164
PFAM:PF00651	PFscan:PS50097	PGSC:PGSC0003DMG400027977	SEG:seg	SMART:SM00225	SUPFAM:SSF54695
UniParc:UPI0002952DB2	UniProt:M1CPH0	MapMan:35.1	:	:	:

Description

SKIP interacting protein 19 [Source:PGSC_GENE;Acc:PGSC0003DMG400027977]

Coordinates

chr6:-:31138727..31139529

Molecular Weight (calculated)

22743.3 Da

IEP (calculated)

4.822

GRAVY (calculated)

-0.138

Length

201 amino acids

Sequence
(BLAST)

001: MKEMEEELKE KLNYLSGFVV ALRDHIHTDI LIKPGNDAPC IPAHRALLAA RSNIFKNILD SDGCKAPPSD NTITLSELNY DELECLLEFL YSGDLAKEKV
101: EKHVYSLSIA ADKYEIPFLQ KFCENQMLGS LNTWNALDVL EISDTCSNTS LKETALNFIV KNMEDIVFTP RFDAFALKNP HLTVQITRAS FIDIKNTRLT
201: V

Best Arabidopsis Sequence Match ( AT3G56230.1 )
(BLAST)

001: MDCSICTTMP SILRPPRNTI CGSCYEGART TIALLKKLEG SKEDRHDKSN HNSTINNGSS ISSSPLFSCE PQPLEKVIKW MKNMKETEEE QKKRIVFLSS
101: FVSGFKEQLH ADILLKPGDD GPPIPAHRAL LASKSEIFKN ILDSDGCKTA PEYAITLQEL NSEQLQALLE FLYTGTLASD KLEKNVYALF IAADKYMIHY
201: LQELCEQYML SSLDISSVLN VLDVSDLGSS KTLKEACVGF VVRNMDDVVF SDKYEPFSQK NQHLCVEITR AFLMETRSKR RD

Arabidopsis Description

BTB/POZ domain-containing protein At3g56230 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYL9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.