Factsheet for Solyc06g050860.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
plasma membrane 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071906	Potato	cytosol	69.53	96.52
VIT_13s0067g02290.t01	Wine grape	cytosol, plastid	67.03	69.26
KRH31216	Soybean	cytosol, plastid	51.25	53.16
KRG97659	Soybean	cytosol, plastid	50.9	52.79
Bra007229.1-P	Field mustard	cytosol	53.41	52.65
CDY27231	Canola	cytosol	53.41	52.65
Solyc05g052290.1.1	Tomato	cytosol	50.18	52.63
CDX72156	Canola	cytosol	52.69	51.94
AT3G56230.1	Thale cress	cytosol	50.18	49.65
GSMUA_Achr5P29570_001	Banana	cytosol	47.31	46.98
Os11t0111900-01	Rice	cytosol	39.43	40.0
Os12t0111500-02	Rice	cytosol	39.43	40.0
CDY32006	Canola	nucleus	32.26	38.96
TraesCS4D01G116200.2	Wheat	cytosol	39.07	38.11
EES09114	Sorghum	cytosol	37.63	37.91
TraesCS4B01G118500.1	Wheat	cytosol	38.35	37.41
Zm00001d036840_P001	Maize	cytosol	38.71	37.24
TraesCS4A01G196800.2	Wheat	cytosol	37.99	37.06
HORVU4Hr1G022110.3	Barley	cytosol	37.28	36.49
Solyc02g032510.2.1	Tomato	cytosol	19.0	19.0

Protein Annotations

Gene3D:1.25.40.420	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019005	GO:GO:0019538
GO:GO:0030162	GO:GO:0031625	GO:GO:0042787	GO:GO:0043161	InterPro:IPR000210	UniProt:K4C5N0
PFAM:PF00651	PFscan:PS50097	PANTHER:PTHR24413	PANTHER:PTHR24413:SF164	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225
SUPFAM:SSF54695	EnsemblPlantsGene:Solyc06g050860.2	EnsemblPlants:Solyc06g050860.2.1	UniParc:UPI0002766CF7	SEG:seg	:

Description

No Description!

Coordinates

chr6:-:33707253..33710897

Molecular Weight (calculated)

31003.2 Da

IEP (calculated)

5.972

GRAVY (calculated)

-0.170

Length

279 amino acids

Sequence
(BLAST)

001: MDCSICSAMP FILRPPRNTI CAACYEGART IITLTTNKVD HVENTKGSDN KTITGLLSAS SSNPSIKGFG NALKWVKEMK EMEEESKEKL NYLSGFVVAL
101: RDHIHTDILI KPGNDAPSIP AHRALLAARS DIFKNILDSD GCKAPPSNNT ITLSELNYDE LECLLEFLYS GDLAKEKVEK HVYSLSIAAD KYEIPFLQKF
201: CENQMLGSLN TSNALDVLEI SDTCSNTSLK ETALNFIVKN MEDIVFTARF DAFALKNPHL TVQITRASFI DIKNRRLTV

Best Arabidopsis Sequence Match ( AT3G56230.1 )
(BLAST)

001: MDCSICTTMP SILRPPRNTI CGSCYEGART TIALLKKLEG SKEDRHDKSN HNSTINNGSS ISSSPLFSCE PQPLEKVIKW MKNMKETEEE QKKRIVFLSS
101: FVSGFKEQLH ADILLKPGDD GPPIPAHRAL LASKSEIFKN ILDSDGCKTA PEYAITLQEL NSEQLQALLE FLYTGTLASD KLEKNVYALF IAADKYMIHY
201: LQELCEQYML SSLDISSVLN VLDVSDLGSS KTLKEACVGF VVRNMDDVVF SDKYEPFSQK NQHLCVEITR AFLMETRSKR RD

Arabidopsis Description

BTB/POZ domain-containing protein At3g56230 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYL9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.