Factsheet for Solyc02g032510.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g010820.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08455.1	Solyc01g010820.2.1	AT1G26830.1	15749712
AT4G08455.1	Solyc01g010820.2.1	AT1G69670.1	15749712

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g01590.t01	Wine grape	cytosol	63.8	67.42
GSMUA_Achr8P32570_001	Banana	cytosol	55.2	62.35
CDY34002	Canola	cytosol	15.77	61.97
CDX83137	Canola	cytosol	59.14	61.8
AT4G08455.1	Thale cress	cytosol	59.14	61.11
Os07t0258700-01	Rice	cytosol	53.76	60.98
OQU88783	Sorghum	cytosol	54.12	58.98
CDY34003	Canola	nucleus	36.56	58.96
TraesCS6A01G046100.1	Wheat	cytosol	30.82	58.11
Zm00001d019328_P003	Maize	cytosol	54.84	57.09
TraesCS6B01G062000.1	Wheat	cytosol	50.9	56.13
TraesCS6A01G045900.1	Wheat	cytosol	50.54	54.86
TraesCS6D01G053100.1	Wheat	cytosol	50.54	54.86
HORVU6Hr1G009330.1	Barley	cytosol	51.97	54.51
KRH64603	Soybean	cytosol	48.03	51.94
KRH53314	Soybean	cytosol, mitochondrion	48.39	51.92
Solyc06g050860.2.1	Tomato	cytosol	19.0	19.0
Solyc05g052290.1.1	Tomato	cytosol	17.92	18.8

Protein Annotations

Gene3D:1.25.40.420	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019005
GO:GO:0019538	GO:GO:0030162	GO:GO:0031625	GO:GO:0042787	GO:GO:0043161	InterPro:IPR000210
UniProt:K4B5J7	PFAM:PF00651	PFscan:PS50097	PANTHER:PTHR24413	PANTHER:PTHR24413:SF131	InterPro:SKP1/BTB/POZ_sf
SMART:SM00225	SUPFAM:SSF54695	EnsemblPlantsGene:Solyc02g032510.2	EnsemblPlants:Solyc02g032510.2.1	UniParc:UPI00027691AF	SEG:seg

Description

No Description!

Coordinates

chr2:-:28535292..28539911

Molecular Weight (calculated)

31865.5 Da

IEP (calculated)

4.739

GRAVY (calculated)

-0.538

Length

279 amino acids

Sequence
(BLAST)

001: MIRGHHRRRS STPSVDFGVD DEEEEESEAQ MKCVSCKEDY GSSDAGTCRE CYEEASETEE ELKREIEDLK AKVNFLRFWS PSQHLHQQQR TTPFFSDIVL
101: VASHDESGKS TPYPVPVPAN RALLASRSPV FRAMLENEME ESLSGTIKIS DVSYEALRAF VTYLYTADAC LDDLMACDLL VLAEKYQVNH LKTYCEKFLI
201: SKLNWENSLP NYGFAHQHNA KKLLDAALSL IMENMDKLSN REEYKELVDK DPRLVVEIYE AYLSKQVNTA VQKDPVAKA

Best Arabidopsis Sequence Match ( AT4G08455.1 )
(BLAST)

001: MRRHHHRCQI GSDSETGSES DSDTDTPMRC ISCREEYLPR NAGTCKECYV EAGETEEELK REIDDLKAKV AFLRLSSSLD HGTSSTSRSF TDVVLIASED
101: NAGSPPIPAH KSVLVSRSPV FKAMLENEME ESLSGTIKIS DVSYDALRTF VYYLYTAEAC LDEQMACDLL VMSEKYQVKH LKSYCERFLV TKLSPDNSLM
201: TYAFAHQHNA KHVLDAALSQ IVENMDKLTK REEYMELVEK DPRLIVEIYE AYLSKQVNTA AGGTSTSKTS

Arabidopsis Description

BTB/POZ domain-containing protein [Source:TAIR;Acc:AT4G08455]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.