Factsheet for Solyc01g010820.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008840.2.1
Solyc01g009060.2.1
Solyc01g080250.2.1
Solyc02g032510.2.1
Solyc02g092460.2.1
Solyc03g111710.2.1
Solyc05g052960.2.1
Solyc06g071820.2.1
Solyc06g071830.2.1
Solyc06g084250.2.1
Solyc07g040690.2.1
Solyc08g014440.2.1
Solyc09g065210.2.1
Solyc10g081150.1.1
Solyc11g062430.1.1
Solyc11g072070.1.1
Solyc12g008540.1.1
Solyc12g008550.1.1
Solyc12g019420.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26830.1	Solyc08g014440.2.1	AT1G05690.1	15772280
AT1G26830.1	Solyc12g019420.1.1	AT1G05690.1	15772280
AT1G26830.1	Solyc07g040690.2.1	AT1G64280.1	19490895
AT1G26830.1	Solyc01g008840.2.1	AT2G26990.1	12615944
AT1G26830.1	Solyc10g081150.1.1	AT2G26990.1	12615944
AT1G26830.1	Solyc11g062430.1.1	AT2G26990.1	12615944
AT1G26830.1	Solyc05g052960.2.1	AT2G39760.1	15618422
AT1G26830.1	Solyc05g052960.2.1	AT2G39760.1	15659098
AT1G26830.1	Solyc05g052960.2.1	AT2G39760.1	15772280
AT1G26830.1	Solyc01g080250.2.1	AT3G06190.1	15772280
AT1G26830.1	Solyc01g009060.2.1	AT3G43700.1	15772280
AT1G26830.1	Solyc11g072070.1.1	AT3G43700.1	15772280
AT1G26830.1	Solyc03g111710.2.1	AT3G48360.1	15772280
AT1G26830.1	Solyc06g071820.2.1	AT3G48360.1	15772280
AT1G26830.1	Solyc06g071830.2.1	AT3G48360.1	15772280
AT1G26830.1	Solyc12g008540.1.1	AT4G07670.1	15749712
AT1G26830.1	Solyc12g008550.1.1	AT4G07670.1	15749712
AT1G26830.1	Solyc02g032510.2.1	AT4G08455.1	15749712
AT1G26830.1	Solyc02g092460.2.1	AT4G37610.1	15772280
AT1G26830.1	Solyc06g084250.2.1	AT5G13060.1	15659098
AT1G26830.1	Solyc09g065210.2.1	AT5G13060.1	15659098
AT1G26830.1	Solyc03g111710.2.1	AT5G63160.1	15772280
AT1G26830.1	Solyc06g071820.2.1	AT5G63160.1	15772280
AT1G26830.1	Solyc06g071830.2.1	AT5G63160.1	15772280
AT1G69670.1	Solyc05g052960.2.1	AT2G39760.1	15618422
AT1G69670.1	Solyc05g052960.2.1	AT2G39760.1	15659098
AT1G69670.1	Solyc12g008540.1.1	AT4G07670.1	15749712
AT1G69670.1	Solyc12g008550.1.1	AT4G07670.1	15749712
AT1G69670.1	Solyc02g032510.2.1	AT4G08455.1	15749712
AT1G69670.1	Solyc06g084250.2.1	AT5G13060.1	15659098
AT1G69670.1	Solyc09g065210.2.1	AT5G13060.1	15659098

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016765	Potato	cytosol	99.05	99.05
VIT_01s0026g02230.t01	Wine grape	cytosol	88.01	88.13
Solyc02g087900.2.1	Tomato	cytosol	86.24	86.36
KRH45896	Soybean	cytosol	85.56	85.79
KRG99095	Soybean	cytosol	85.29	85.52
AT1G26830.1	Thale cress	cytosol	83.52	83.74
AT1G69670.1	Thale cress	cytosol	83.38	83.61
Bra016291.1-P	Field mustard	cytosol	82.83	83.06
CDY46437	Canola	cytosol	82.7	82.92
CDY50732	Canola	cytosol	82.56	82.79
CDY16196	Canola	cytosol	82.56	82.79
CDY45004	Canola	cytosol	82.43	82.65
Bra024680.1-P	Field mustard	cytosol	82.29	82.51
GSMUA_Achr7P18000_001	Banana	cytosol	79.56	82.49
GSMUA_Achr8P16990_001	Banana	cytosol	79.43	82.34
GSMUA_AchrUn_...	Banana	cytosol	79.29	82.2
TraesCS6D01G285800.1	Wheat	cytosol	81.61	81.39
TraesCS6B01G335200.1	Wheat	cytosol	81.61	81.39
EES05529	Sorghum	cytosol	81.47	81.25
TraesCS6A01G306600.1	Wheat	cytosol	81.47	81.25
Os02t0746000-01	Rice	cytosol	81.06	80.84
Zm00001d018043_P001	Maize	cytosol	80.79	80.57
HORVU6Hr1G075720.2	Barley	cytosol	81.06	79.76
GSMUA_AchrUn_...	Banana	cytosol	64.58	79.66
KRH70713	Soybean	cytosol	74.52	75.24
Solyc02g021470.2.1	Tomato	cytosol, nucleus, plastid	41.55	38.85
Solyc02g070460.2.1	Tomato	plastid	41.69	38.15
Solyc01g067170.1.1	Tomato	mitochondrion, plastid	6.81	37.31
Solyc01g067210.2.1	Tomato	cytosol	26.84	34.62
Solyc09g074680.2.1	Tomato	cytosol	34.6	34.32
Solyc01g067100.2.1	Tomato	cytosol	34.47	34.1
Solyc01g067140.1.1	Tomato	cytosol	18.53	33.66
Solyc06g084520.2.1	Tomato	cytosol	33.92	33.65
Solyc09g010050.1.1	Tomato	cytosol	32.15	32.11
Solyc06g008710.1.1	Tomato	cytosol	28.75	28.4
Solyc01g067270.2.1	Tomato	cytosol	8.04	25.76
Solyc05g018040.1.1	Tomato	cytosol	8.58	25.1
Solyc01g067120.2.1	Tomato	cytosol	4.63	20.24
Solyc06g008080.1.1	Tomato	cytosol	8.04	19.28
Solyc01g067200.1.1	Tomato	cytosol	4.77	18.23
Solyc01g099290.2.1	Tomato	cytosol	6.4	17.67
Solyc01g067260.2.1	Tomato	plastid	4.63	16.27

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	MapMan:19.2.2.8.2.1	InterPro:Cullin_N	InterPro:Cullin_homology
InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0031461	GO:GO:0031625	GO:GO:0042787	GO:GO:0061630	InterPro:IPR016158
InterPro:IPR036388	UniProt:K4ATS5	PFAM:PF00888	PFAM:PF10557	PFscan:PS50069	PANTHER:PTHR11932
PANTHER:PTHR11932:SF95	SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF74788	SUPFAM:SSF75632
EnsemblPlantsGene:Solyc01g010820.2	EnsemblPlants:Solyc01g010820.2.1	UniParc:UPI0002761D06	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg

Description

No Description!

Coordinates

chr1:+:6221769..6229793

Molecular Weight (calculated)

85476.1 Da

IEP (calculated)

7.598

GRAVY (calculated)

-0.491

Length

734 amino acids

Sequence
(BLAST)

001: MSSNQKKRNF QIEAFKHKVV VDPKYAEKTW KILEHAIHEI YNHNASGLSF EELYRNAYNM VLHKFGEKLY SGLVFTITFH LQHISKSIEC AQGDLFLEEL
101: NRQWADHNKA LQMIRDILMY MDRTFVPSTH KTPVHELGLN LWRDNIVRSS NIQMRLLSTL LELILKERDG EVINRGLMRN IIKMFMDLGP SVYQEDFEKP
201: FLEISADFYR AESQKFIECC DCGDYLKKAE KRLTEEIERV SHYLDPKTEA KITNVVEKEM IENHMPRLVH MENSGLVNML LDDKYEDLRR MYNLFRRVTN
301: GLATIRDVMT SHIREIGKQL VTDPEKLKDP VEFVQCLLNE KDKYDNIIVL AFNNDKTFQN ALNSSFEFFI NLNPRSPEFI SLFVDEKLRK GLKGVSEEDV
401: EVILDKVMML FRYLQEKDVF EKYYKQHLAK RLLSGKTVSD DAERSLIVKL KTECGYQFTS KLEGMFTDMK TSQDTMQGFH TAYGAELGDG PSLVVQVLTT
501: GSWPTQPGVT CNLPAELSAL CEKFRSYYLG THTGRRLSWQ TNMGTADLKA TFGKGQKHEL NVSTYQMCVL MLFNNADRLM YKEIEQATEI PSSDLKRCLQ
601: SLACVKGKNV LRKEPMSKDI GEDDAFFVND KFTSKFYKVK IGTVVAQKES EPEKQETRQR VEEDRKPQIE AAIVRIMKSR KVLDHNNIIA EVTKQLQSRF
701: LANPGEIKKR IESLIERDFL ERDNADRRLY RYLA

Best Arabidopsis Sequence Match ( AT1G26830.1 )
(BLAST)

001: MSNQKKRNFQ IEAFKHRVVV DPKYADKTWQ ILERAIHQIY NQDASGLSFE ELYRNAYNMV LHKFGEKLYT GFIATMTSHL KEKSKLIEAA QGGSFLEELN
101: KKWNEHNKAL EMIRDILMYM DRTYIESTKK THVHPMGLNL WRDNVVHFTK IHTRLLNTLL DLVQKERIGE VIDRGLMRNV IKMFMDLGES VYQEDFEKPF
201: LDASSEFYKV ESQEFIESCD CGDYLKKSEK RLTEEIERVA HYLDAKSEEK ITSVVEKEMI ANHMQRLVHM ENSGLVNMLL NDKYEDLGRM YNLFRRVTNG
301: LVTVRDVMTS HLREMGKQLV TDPEKSKDPV EFVQRLLDER DKYDKIINTA FGNDKTFQNA LNSSFEYFIN LNARSPEFIS LFVDDKLRKG LKGITDVDVE
401: VILDKVMMLF RYLQEKDVFE KYYKQHLAKR LLSGKTVSDD AERSLIVKLK TECGYQFTSK LEGMFTDMKT SEDTMRGFYG SHPELSEGPT LIVQVLTTGS
501: WPTQPAVPCN LPAEVSVLCE KFRSYYLGTH TGRRLSWQTN MGTADIKAIF GKGQKHELNV STFQMCVLML FNNSDRLSYK EIEQATEIPA ADLKRCLQSL
601: ACVKGKNVIK KEPMSKDIGE EDLFVVNDKF TSKFYKVKIG TVVAQKETEP EKQETRQRVE EDRKPQIEAA IVRIMKSRKI LDHNNIIAEV TKQLQPRFLA
701: NPTEIKKRIE SLIERDFLER DSTDRKLYRY LA

Arabidopsis Description

CUL3ACUL3A [Source:UniProtKB/TrEMBL;Acc:A0A178WM88]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.