Factsheet for Solyc06g071830.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
plasma membrane 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g010820.2.1
Solyc02g093880.2.1
Solyc06g065380.2.1
Solyc11g018610.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48360.1	Solyc01g010820.2.1	AT1G26830.1	15772280
AT3G48360.1	Solyc06g065380.2.1	AT1G35670.1	19130088
AT3G48360.1	Solyc11g018610.1.1	AT1G35670.1	19130088
AT3G48360.1	Solyc02g093880.2.1	AT3G01770.1	15316289
AT3G48360.1	Solyc06g065380.2.1	AT4G09570.1	19130088
AT3G48360.1	Solyc11g018610.1.1	AT4G09570.1	19130088
AT5G63160.1	Solyc01g010820.2.1	AT1G26830.1	15772280
AT5G63160.1	Solyc02g093880.2.1	AT3G01770.1	15316289

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069392	Potato	nucleus	90.69	86.53
Solyc03g111710.2.1	Tomato	nucleus	71.17	68.7
Solyc06g071820.2.1	Tomato	nucleus	70.27	67.05
VIT_17s0000g09790.t01	Wine grape	cytosol	62.46	59.94
CDY41504	Canola	nucleus	54.35	54.52
KRH63672	Soybean	nucleus	53.15	54.13
KRH57174	Soybean	cytosol	35.14	52.94
AT5G63160.1	Thale cress	nucleus	57.96	52.88
KRH03892	Soybean	cytosol	54.65	52.6
Bra029235.1-P	Field mustard	nucleus	57.96	52.45
Bra038612.1-P	Field mustard	nucleus	57.06	52.34
CDX84392	Canola	nucleus	56.76	52.21
CDY70710	Canola	nucleus	23.72	50.32
CDY48173	Canola	nucleus	54.65	50.14
AT3G48360.1	Thale cress	nucleus	54.35	49.73
CDY30743	Canola	nucleus	58.26	48.87
Bra018065.1-P	Field mustard	nucleus	55.26	48.68
CDY39576	Canola	nucleus	53.45	48.5
CDY45741	Canola	nucleus	57.66	48.36
KRH37914	Soybean	cytosol	14.11	47.0
GSMUA_AchrUn_...	Banana	nucleus	47.15	45.64
GSMUA_Achr11P...	Banana	nucleus	48.35	45.35
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	45.95	43.34
Os01t0908200-01	Rice	cytosol	45.05	43.23
GSMUA_Achr9P02050_001	Banana	cytosol	44.14	43.11
Zm00001d042443_P001	Maize	cytosol	43.84	42.44
EES01931	Sorghum	cytosol	44.44	42.41
GSMUA_Achr6P12110_001	Banana	nucleus	42.94	41.33
TraesCS3B01G448000.1	Wheat	cytosol, plastid	41.74	40.17
HORVU3Hr1G092090.3	Barley	mitochondrion, nucleus	23.72	40.1
Solyc02g092460.2.1	Tomato	mitochondrion, nucleus	34.53	40.07
TraesCS3B01G448100.1	Wheat	plastid	42.04	39.77
TraesCS3A01G413600.1	Wheat	cytosol, plastid	41.44	39.66
TraesCS3D01G408100.1	Wheat	cytosol, plastid	41.14	39.26
TraesCS3D01G408000.1	Wheat	plastid	41.44	39.09
TraesCS2A01G323000.1	Wheat	cytosol	39.34	38.64
TraesCS2B01G359600.1	Wheat	cytosol	38.74	38.05
TraesCS2D01G339900.1	Wheat	cytosol	38.74	38.05
TraesCS3A01G413700.1	Wheat	cytosol, plastid	39.94	37.89
Zm00001d025707_P001	Maize	cytosol	38.14	37.24
Os04t0482300-01	Rice	cytosol	38.74	36.34
GSMUA_Achr6P12420_001	Banana	nucleus	40.54	36.29
TraesCS2B01G359400.1	Wheat	cytosol	37.54	36.13
EES11006	Sorghum	cytosol, endoplasmic reticulum, nucleus	39.04	35.91
TraesCS2A01G323200.1	Wheat	cytosol	36.64	35.26
HORVU2Hr1G083410.1	Barley	cytosol	8.41	35.0
EES05370	Sorghum	plastid	37.24	34.83
Zm00001d017101_P001	Maize	plastid	37.24	33.6
TraesCS2D01G339700.1	Wheat	cytosol	37.84	33.25
Solyc08g014440.2.1	Tomato	nucleus	37.24	32.72
HORVU2Hr1G083430.3	Barley	nucleus	13.51	25.71
Solyc12g019420.1.1	Tomato	cytosol	19.22	25.3
Os02t0596700-00	Rice	plastid	15.62	17.45
HORVU2Hr1G083490.1	Barley	extracellular	4.5	17.24

Protein Annotations

Gene3D:1.20.1020.10	Gene3D:1.25.40.420	MapMan:15.5.31	MapMan:19.2.2.8.2.2.4	Gene3D:3.30.710.10	InterPro:BTB/POZ_dom
GO:GO:0003674	GO:GO:0003712	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139
GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016573	GO:GO:0016740	GO:GO:0019005
GO:GO:0019538	GO:GO:0030162	GO:GO:0031625	GO:GO:0042787	GO:GO:0043161	InterPro:IPR000197
InterPro:IPR000210	InterPro:IPR035898	UniProt:K4C8Q5	PFAM:PF00651	PFAM:PF02135	PFscan:PS50097
PANTHER:PTHR24413	PANTHER:PTHR24413:SF75	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SMART:SM00551	InterPro:SPOP_C
SUPFAM:SSF54695	SUPFAM:SSF57933	EnsemblPlantsGene:Solyc06g071830.2	EnsemblPlants:Solyc06g071830.2.1	InterPro:TAZ_dom_sf	UniParc:UPI000276556B
InterPro:Znf_TAZ	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:-:44245247..44249578

Molecular Weight (calculated)

38772.6 Da

IEP (calculated)

8.992

GRAVY (calculated)

-0.380

Length

333 amino acids

Sequence
(BLAST)

001: MNMFASDVDI ITSAGRRIPA HSNVLAAAST VLESVLVCQQ RSFEKKIQIL GVPCGSVYVF VQFLYSFKCT KDQMEKHGIH LLALSHVYLV PCLKHRCTKA
101: LAEQLTIENV IDMIQLARLC DAPHLYLKCM KFLRSNFSKV KKTEGWKFLQ RHDPLLELEI LQFTDEAELR KKRRRRHTRE QNLYLQLSEG MDCLEHICRE
201: GCTSVGPYDE EYSCQKKLPC SKFDTCQGLQ LLITHFSTCK KRVKGSCSQC KRMWQLLRLH ASICDQPDDC RVPLCRELKQ KLEKGGDDEL WKSLVRKVVS
301: ARAMTFLSMP KRKREEEESR LNLRDHQIRR FLD

Best Arabidopsis Sequence Match ( AT5G63160.1 )
(BLAST)

001: MAITATQNDG VSLNANKISY DLVETDVEII TSGRRSIPAH SGILASVSPV LTNIIEKPRK IHGGSSKKVI KILGVPCDAV SVFVRFLYSP SVTENEMEKY
101: GIHLLALSHV YMVTQLKQRC TKGVGERVTA ENVVDILQLA RLCDAPDLCL KCMRFIHYKF KTVEQTEGWK FLQEHDPFLE LDILQFIDDA ESRKKRRRRH
201: RREQNLYLQL SEAMECIEHI CTEGCTLVGP SSNLDNKSTC QAKPGPCSAF STCYGLQLLI RHFAVCKKRV DGKGCVRCKR MIQLLRLHSS ICDQSESCRV
301: PLCRQYKNRG EKDKKMVEDT KWKVLVRRVA SAKAMSSLSQ SKKKKSEVLF KEEAEDLIRI RNKLM

Arabidopsis Description

BT1BTB/POZ and TAZ domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMK7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.