Factsheet for PGSC0003DMT400069392

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002331
PGSC0003DMT400016765
PGSC0003DMT400052108
PGSC0003DMT400067082

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48360.1	PGSC0003DMT400016765	AT1G26830.1	15772280
AT3G48360.1	PGSC0003DMT400002331	AT1G35670.1	19130088
AT3G48360.1	PGSC0003DMT400067082	AT1G35670.1	19130088
AT3G48360.1	PGSC0003DMT400052108	AT3G01770.1	15316289
AT3G48360.1	PGSC0003DMT400002331	AT4G09570.1	19130088
AT3G48360.1	PGSC0003DMT400067082	AT4G09570.1	19130088
AT5G63160.1	PGSC0003DMT400016765	AT1G26830.1	15772280
AT5G63160.1	PGSC0003DMT400052108	AT3G01770.1	15316289

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g071830.2.1	Tomato	nucleus	86.53	90.69
PGSC0003DMT400069397	Potato	nucleus	72.21	75.68
PGSC0003DMT400039384	Potato	nucleus	72.78	73.62
VIT_17s0000g09790.t01	Wine grape	cytosol	61.89	62.25
CDY41504	Canola	nucleus	54.15	56.93
KRH63672	Soybean	nucleus	52.44	55.96
KRH57174	Soybean	cytosol	35.24	55.66
KRH03892	Soybean	cytosol	54.73	55.2
Bra029235.1-P	Field mustard	nucleus	57.59	54.62
Bra038612.1-P	Field mustard	nucleus	56.73	54.55
AT5G63160.1	Thale cress	nucleus	57.02	54.52
CDX84392	Canola	nucleus	56.16	54.14
CDY48173	Canola	nucleus	54.44	52.34
AT3G48360.1	Thale cress	nucleus	53.87	51.65
CDY70710	Canola	nucleus	22.92	50.96
CDY30743	Canola	nucleus	57.88	50.88
Bra018065.1-P	Field mustard	nucleus	54.73	50.53
CDY39576	Canola	nucleus	53.01	50.41
CDY45741	Canola	nucleus	57.31	50.38
GSMUA_AchrUn_...	Banana	nucleus	47.56	48.26
GSMUA_Achr11P...	Banana	nucleus	48.42	47.61
GSMUA_Achr9P02050_001	Banana	cytosol	45.27	46.33
KRH37914	Soybean	cytosol	13.18	46.0
Os01t0908200-01	Rice	cytosol	45.56	45.82
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	46.13	45.61
Zm00001d042443_P001	Maize	cytosol	44.7	45.35
EES01931	Sorghum	cytosol	44.7	44.7
TraesCS3B01G448000.1	Wheat	cytosol, plastid	43.27	43.64
TraesCS3B01G448100.1	Wheat	plastid	43.27	42.9
GSMUA_Achr6P12110_001	Banana	nucleus	42.41	42.77
TraesCS3D01G408100.1	Wheat	cytosol, plastid	42.69	42.69
TraesCS3A01G413600.1	Wheat	cytosol, plastid	42.41	42.53
HORVU3Hr1G092090.3	Barley	mitochondrion, nucleus	23.78	42.13
TraesCS3D01G408000.1	Wheat	plastid	42.12	41.64
TraesCS2A01G323000.1	Wheat	cytosol	39.54	40.71
TraesCS2D01G339900.1	Wheat	cytosol	39.54	40.71
TraesCS3A01G413700.1	Wheat	cytosol, plastid	40.4	40.17
TraesCS2B01G359600.1	Wheat	cytosol	38.97	40.12
Zm00001d025707_P001	Maize	cytosol	38.97	39.88
Os04t0482300-01	Rice	cytosol	39.54	38.87
HORVU2Hr1G083410.1	Barley	cytosol	8.88	38.75
GSMUA_Achr6P12420_001	Banana	nucleus	40.97	38.44
EES11006	Sorghum	cytosol, endoplasmic reticulum, nucleus	38.97	37.57
TraesCS2B01G359400.1	Wheat	cytosol	36.96	37.28
EES05370	Sorghum	plastid	37.82	37.08
TraesCS2A01G323200.1	Wheat	cytosol	36.68	36.99
PGSC0003DMT400055194	Potato	nucleus	38.4	35.45
Zm00001d017101_P001	Maize	plastid	36.96	34.96
PGSC0003DMT400064939	Potato	nucleus	40.11	34.74
TraesCS2D01G339700.1	Wheat	cytosol	37.25	34.3
HORVU2Hr1G083430.3	Barley	nucleus	13.47	26.86
PGSC0003DMT400013718	Potato	cytosol	20.06	26.52
HORVU2Hr1G083490.1	Barley	extracellular	4.87	19.54
Os02t0596700-00	Rice	plastid	15.76	18.46

Protein Annotations

Gene3D:1.20.1020.10	Gene3D:1.25.40.420	EntrezGene:102582857	MapMan:15.5.31	MapMan:19.2.2.8.2.2.4	Gene3D:3.30.710.10
InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0003712	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016573	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000197
InterPro:IPR000210	InterPro:IPR035898	UniProt:M1CKD8	PFAM:PF00651	PFAM:PF02135	EnsemblPlantsGene:PGSC0003DMG401026984
PGSC:PGSC0003DMG401026984	EnsemblPlants:PGSC0003DMT400069392	PFscan:PS50097	PANTHER:PTHR24413	PANTHER:PTHR24413:SF75	InterPro:SKP1/BTB/POZ_sf
SMART:SM00225	SMART:SM00551	InterPro:SPOP_C	SUPFAM:SSF54695	SUPFAM:SSF57933	InterPro:TAZ_dom_sf
UniParc:UPI000294C882	RefSeq:XP_006347420.1	InterPro:Znf_TAZ	SEG:seg	:	:

Description

BTB/POZ domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG401026984]

Coordinates

chr6:-:52630530..52635411

Molecular Weight (calculated)

40833.7 Da

IEP (calculated)

8.534

GRAVY (calculated)

-0.473

Length

349 amino acids

Sequence
(BLAST)

001: MSPNMFASNV DAHHGENEMA EGDVDIITSA GRRIPAHSNV LAAASTVLES ILGRWRRSYE TPIRILGVPC DSVSVFVRFL YSFKCTKEQM EKHGIHLLAL
101: SHVYLVPCLK HRCTKALAEQ LTIENVIDMI QLARLCDAPH LYLKCMKFLR SNFKKVEETE GWKFLQHHDP LLELEILQFT DEAELRKKRR RRHTQEQNLY
201: LQLSEGMDCL EHICREGCTS VGPYDEEYSC QKKLPCSKFD TCQGLQLLIR HFSTCKRRVK GSCFQCKRMW QLLRLHASIC DQPDDCRVPL CREFKQKLEK
301: RGDDELWKSL VRKVVSARAM TFLSLPKRKR EEEEPRLNLR DHQIRRFLD

Best Arabidopsis Sequence Match ( AT5G63160.1 )
(BLAST)

001: MAITATQNDG VSLNANKISY DLVETDVEII TSGRRSIPAH SGILASVSPV LTNIIEKPRK IHGGSSKKVI KILGVPCDAV SVFVRFLYSP SVTENEMEKY
101: GIHLLALSHV YMVTQLKQRC TKGVGERVTA ENVVDILQLA RLCDAPDLCL KCMRFIHYKF KTVEQTEGWK FLQEHDPFLE LDILQFIDDA ESRKKRRRRH
201: RREQNLYLQL SEAMECIEHI CTEGCTLVGP SSNLDNKSTC QAKPGPCSAF STCYGLQLLI RHFAVCKKRV DGKGCVRCKR MIQLLRLHSS ICDQSESCRV
301: PLCRQYKNRG EKDKKMVEDT KWKVLVRRVA SAKAMSSLSQ SKKKKSEVLF KEEAEDLIRI RNKLM

Arabidopsis Description

BT1BTB/POZ and TAZ domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMK7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.