Factsheet for PGSC0003DMT400055194

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400016765

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37610.1	PGSC0003DMT400016765	AT1G26830.1	15772280

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g092460.2.1	Tomato	mitochondrion, nucleus	71.96	94.77
VIT_07s0129g00210.t01	Wine grape	cytosol, nucleus, plastid	59.26	60.38
CDY36495	Canola	cytosol	57.41	57.11
Bra024446.1-P	Field mustard	cytosol	57.14	56.84
CDY08721	Canola	cytosol	57.14	56.84
KRH77116	Soybean	plastid	56.61	56.46
AT5G67480.2	Thale cress	cytosol	57.14	56.4
GSMUA_Achr6P24750_001	Banana	nucleus	52.65	52.37
AT4G37610.1	Thale cress	nucleus	47.09	48.37
CDY50978	Canola	nucleus, plastid	46.83	47.33
CDX75666	Canola	nucleus	46.3	46.79
Bra011776.1-P	Field mustard	nucleus, plastid	46.3	46.79
CDY29568	Canola	nucleus	46.03	45.91
Bra017839.1-P	Field mustard	nucleus	46.03	45.91
CDX72641	Canola	nucleus, plastid	44.97	44.74
PGSC0003DMT400064939	Potato	nucleus	47.62	44.66
PGSC0003DMT400069397	Potato	nucleus	36.24	41.14
PGSC0003DMT400069392	Potato	nucleus	35.45	38.4
PGSC0003DMT400039384	Potato	nucleus	34.92	38.26
PGSC0003DMT400013718	Potato	cytosol	24.6	35.23

Protein Annotations

Gene3D:1.20.1020.10	Gene3D:1.25.40.420	MapMan:15.5.31	MapMan:19.2.2.8.2.2.4	Gene3D:3.30.710.10	InterPro:BTB/POZ_dom
GO:GO:0003674	GO:GO:0003712	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016573	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000197	InterPro:IPR000210
InterPro:IPR035898	UniProt:M1BXI5	PFAM:PF00651	PFAM:PF02135	EnsemblPlantsGene:PGSC0003DMG400021422	PGSC:PGSC0003DMG400021422
EnsemblPlants:PGSC0003DMT400055194	PFscan:PS50097	PFscan:PS50134	PANTHER:PTHR24413	PANTHER:PTHR24413:SF145	InterPro:SKP1/BTB/POZ_sf
SMART:SM00225	SMART:SM00551	InterPro:SPOP_C	SUPFAM:SSF54695	SUPFAM:SSF57933	InterPro:TAZ_dom_sf
UniParc:UPI0002957306	InterPro:Znf_TAZ	SEG:seg	:	:	:

Description

Transcription cofactor [Source:PGSC_GENE;Acc:PGSC0003DMG400021422]

Coordinates

chr2:+:42776540..42779479

Molecular Weight (calculated)

43110.4 Da

IEP (calculated)

9.520

GRAVY (calculated)

-0.433

Length

378 amino acids

Sequence
(BLAST)

001: MSKKDEESPR VSASPNPPPL PVAFISSRQE STFAARKSAV RKYCCTPTAT KNTWDCLFDE GYRADVSINT DNGGVLYAHA SILGVNSAVF KSMLSLKQSR
101: AHGRCGQRSI SINGVPPEAV QVFIRFLYSS RYEEEKMKEH GLSLLVLSHA YAVTHLKREC EWQLEQRLTT ENVVDIFQLA LLCDASRLSL VCHHFMMKNL
201: KPISATEGWK AMKQSHPVLE KQMLKSIIDE DIREKERVRK NNERKMYMQL YEAMEALVHI CKDGCRTIGP HDKVLKEDQE PCHYAACKGL ESLIRHFAGC
301: KLRVPGGCIH CKRMWQVLEL HSRLCANSDV CKVPLCRSFK QKRRKQNKKD EMKWSILVRK IVRSKSISGA PFFSSEST

Best Arabidopsis Sequence Match ( AT5G67480.3 )
(BLAST)

001: MVTGCVDLHQ SFKSADSSSV PIPPPLPSKS DGLKKKLGHS SVSTATRDMW DRLFNDGYKA DVVIYTDNGS IIYAHANILG TASTVIKGML KQAKRHGKWH
101: TISIRGVPHD AVRVFIRFLY SSCYEKEEMN EFIMHLLLLS HAYVVPQLKR VCEWHLEHGL LTTENVVDVF QLALLCDFPR LSLISHRMIM KHFNELSATE
201: AWTAMKKSHP FLEKEVRDSV IIEANTRKER MRKRNDQRIY SQLYEAMEAL VHICRDGCKT IGPHDKDFKP NHATCNYEAC KGLESLIRHF AGCKLRVPGG
301: CVHCKRMWQL LELHSRVCAG SDQCRVPLCR NLKEKMEKQS KKDESRWKLL VKNVLGSKKI GGSPFFLPVT NC

Arabidopsis Description

BT4BTB and TAZ domain protein 4 [Source:TAIR;Acc:AT5G67480]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.