CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY16196
CDY45004
CDY46437
CDY50732

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37610.1	CDY16196	AT1G26830.1	15772280
AT4G37610.1	CDY45004	AT1G26830.1	15772280
AT4G37610.1	CDY46437	AT1G26830.1	15772280
AT4G37610.1	CDY50732	AT1G26830.1	15772280

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75666	Canola	nucleus	97.06	97.06
AT4G37610.1	Thale cress	nucleus	84.76	86.14
CDY29568	Canola	nucleus	85.56	84.43
CDX72641	Canola	nucleus, plastid	85.56	84.21
CDY36495	Canola	cytosol	56.42	55.53
CDY08721	Canola	cytosol	55.88	55.0
VIT_07s0129g00210.t01	Wine grape	cytosol, nucleus, plastid	54.01	54.45
Solyc02g092460.2.1	Tomato	mitochondrion, nucleus	40.11	52.26
KRH77116	Soybean	plastid	51.6	50.92
PGSC0003DMT400055194	Potato	nucleus	47.33	46.83
GSMUA_Achr6P24750_001	Banana	nucleus	47.06	46.32
CDY41504	Canola	nucleus	33.42	37.65
CDY10140	Canola	plastid	36.63	37.33
CDY48173	Canola	nucleus	34.22	35.26
CDY39576	Canola	nucleus	34.49	35.15
CDX84392	Canola	nucleus	33.69	34.81
CDX86561	Canola	nucleus	38.77	34.61
CDY15554	Canola	nucleus	38.77	34.2
CDY70710	Canola	nucleus	14.17	33.76
CDY45741	Canola	nucleus	35.29	33.25
CDY30743	Canola	nucleus	34.49	32.49

Protein Annotations

Gene3D:1.20.1020.10	Gene3D:1.25.40.420	MapMan:15.5.31	MapMan:19.2.2.8.2.2.4	Gene3D:3.30.710.10	GO:A0A078IPI8
UniProt:A0A078IPI8	InterPro:BTB/POZ_dom	EnsemblPlants:CDY50978	ProteinID:CDY50978	ProteinID:CDY50978.1	GO:GO:0003674
GO:GO:0003712	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016573	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00097858001	InterPro:IPR000197	InterPro:IPR000210
InterPro:IPR035898	PFAM:PF00651	PFAM:PF02135	PFscan:PS50097	PANTHER:PTHR24413	PANTHER:PTHR24413:SF145
InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SMART:SM00551	InterPro:SPOP_C	SUPFAM:SSF54695	SUPFAM:SSF57933
InterPro:TAZ_dom_sf	UniParc:UPI0004EF390C	InterPro:Znf_TAZ	SEG:seg	:	:

Description

BnaA06g37740DBnaA06g37740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IPI8]

Coordinates

chrLK032953:-:93688..95578

Molecular Weight (calculated)

42616.0 Da

IEP (calculated)

8.993

GRAVY (calculated)

-0.345

Length

374 amino acids

Sequence
(BLAST)

001: MENMDVISPE NASGPPSPPP PPVKSNSGTM WKKSTLQKCN IFASKATRDA WDRMFDEAHG ADVLIHTDDN GLIYAHSNVI GMASDVIRGL MKQDKKNSRR
101: KSISILGVPH DAVRVFIRFL YSSCYEKQDM EDFAMHLLVL SHVYVVPHLK RVCESHFENT LLNEENVIDV FQLALLCDAP RLGLLCHRMI LKSFEEVSTS
201: QGWIAMKQSH PSLHKELLRS VSYELNSLKQ RSRKQKEIQT YTQLYDAMEA FVHICRDGCR EIGPTKIKNP HVSCGFQACN GLEMLLKHLA GCKLRSIPGG
301: CSRCKRMWQL LELHSHICVD SEQCKVPLCS SFKERMKKQS RKDEKRWKLL VKNVLSTKRI GGSPFFLQAI DVNM

Best Arabidopsis Sequence Match ( AT4G37610.1 )
(BLAST)

001: MENMDDFSPE NVLAPPPPPP PMKKSTDLFM QRSNSFVSKA TRDSWDRMFD EAHGADVLIH TDDNGLIYAH SNVIGMASDV IRGMMKQHKR KSHRKSISIL
101: GVPHHALRVF IRFLYSSCYE KQDMEDFAIH LLVLSHVYVV PHLKRVCESE FESSLLNKEN VIDVFQLALL CDAPRLGLLC HRMILNNFEE VSTSEGWQAM
201: KESHPRLQKE LLRSVAYELN SLKQRNRKQK EIQTYTQLYE AMEAFVHICR DGCREIGPTK TETPHMSCGF QACNGLEQLL KHLAGCKLRS IPGGCSRCKR
301: MWQLLELHSR ICVDSEQCKV PLCSSLKERM KTQSRKDEKR WKLLVRNVLS TKRIGGSPFF LQAIDVTL

Arabidopsis Description

BT5BTB/POZ and TAZ domain-containing protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6EJ98]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.