CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY16196
CDY45004
CDY46437
CDY50732

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63160.1	CDY16196	AT1G26830.1	15772280
AT5G63160.1	CDY45004	AT1G26830.1	15772280
AT5G63160.1	CDY46437	AT1G26830.1	15772280
AT5G63160.1	CDY50732	AT1G26830.1	15772280

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH37914	Soybean	cytosol	31.21	49.0
CDX84392	Canola	nucleus	96.82	41.99
Bra038612.1-P	Field mustard	nucleus	96.18	41.6
AT5G63160.1	Thale cress	nucleus	89.17	38.36
CDY30743	Canola	nucleus	89.17	35.26
CDY41504	Canola	nucleus	74.52	35.24
CDY45741	Canola	nucleus	87.9	34.76
HORVU3Hr1G092090.3	Barley	mitochondrion, nucleus	38.22	30.46
CDY48173	Canola	nucleus	64.97	28.1
CDY39576	Canola	nucleus	61.15	26.16
VIT_17s0000g09790.t01	Wine grape	cytosol	57.32	25.94
PGSC0003DMT400069397	Potato	nucleus	52.23	24.62
Solyc03g111710.2.1	Tomato	nucleus	53.5	24.35
PGSC0003DMT400039384	Potato	nucleus	53.5	24.35
HORVU2Hr1G083430.3	Barley	nucleus	26.75	24.0
Solyc06g071830.2.1	Tomato	nucleus	50.32	23.72
KRH63672	Soybean	nucleus	48.41	23.24
Solyc06g071820.2.1	Tomato	nucleus	51.59	23.21
PGSC0003DMT400069392	Potato	nucleus	50.96	22.92
KRH03892	Soybean	cytosol	49.68	22.54
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	44.59	19.83
GSMUA_Achr11P...	Banana	nucleus	44.59	19.72
GSMUA_Achr9P02050_001	Banana	cytosol	42.04	19.35
GSMUA_AchrUn_...	Banana	nucleus	41.4	18.9
Zm00001d042443_P001	Maize	cytosol	40.76	18.6
Os01t0908200-01	Rice	cytosol	40.76	18.44
HORVU2Hr1G083490.1	Barley	extracellular	10.19	18.39
EES01931	Sorghum	cytosol	40.13	18.05
TraesCS3B01G448000.1	Wheat	cytosol, plastid	38.22	17.34
TraesCS3A01G413600.1	Wheat	cytosol, plastid	38.22	17.24
TraesCS3D01G408100.1	Wheat	cytosol, plastid	38.22	17.19
TraesCS2A01G323000.1	Wheat	cytosol	36.94	17.11
TraesCS2B01G359600.1	Wheat	cytosol	36.94	17.11
TraesCS3D01G408000.1	Wheat	plastid	38.22	17.0
TraesCS3B01G448100.1	Wheat	plastid	37.58	16.76
TraesCS3A01G413700.1	Wheat	cytosol, plastid	36.94	16.52
TraesCS2B01G359400.1	Wheat	cytosol	36.31	16.47
TraesCS2D01G339900.1	Wheat	cytosol	35.03	16.22
TraesCS2A01G323200.1	Wheat	cytosol	35.03	15.9
GSMUA_Achr6P12420_001	Banana	nucleus	36.31	15.32
GSMUA_Achr6P12110_001	Banana	nucleus	33.76	15.32
TraesCS2D01G339700.1	Wheat	cytosol	36.94	15.3
CDY36495	Canola	cytosol	35.67	14.74
Zm00001d025707_P001	Maize	cytosol	31.85	14.66
Os04t0482300-01	Rice	cytosol	33.12	14.65
CDY29568	Canola	nucleus	35.03	14.51
CDY08721	Canola	cytosol	35.03	14.47
CDX75666	Canola	nucleus	34.39	14.44
CDX72641	Canola	nucleus, plastid	34.39	14.21
CDY50978	Canola	nucleus, plastid	33.76	14.17
EES11006	Sorghum	cytosol, endoplasmic reticulum, nucleus	31.21	13.54
EES05370	Sorghum	plastid	29.94	13.2
Zm00001d017101_P001	Maize	plastid	29.3	12.47
CDY10140	Canola	plastid	28.66	12.26
CDX86561	Canola	nucleus	32.48	12.17
CDY15554	Canola	nucleus	31.85	11.79
KRH57174	Soybean	cytosol	10.19	7.24
Os02t0596700-00	Rice	plastid	11.46	6.04
HORVU2Hr1G083410.1	Barley	cytosol	1.27	2.5

Protein Annotations

Gene3D:1.20.1020.10	MapMan:15.5.31	MapMan:19.2.2.8.2.2.4	GO:A0A078JW93	UniProt:A0A078JW93	EnsemblPlants:CDY70710
ProteinID:CDY70710	ProteinID:CDY70710.1	GO:GO:0003674	GO:GO:0003712	GO:GO:0003824	GO:GO:0004402
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016573	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00006902001
InterPro:IPR000197	InterPro:IPR035898	PFAM:PF02135	PANTHER:PTHR24413	PANTHER:PTHR24413:SF75	SMART:SM00551
SUPFAM:SSF57933	InterPro:TAZ_dom_sf	UniParc:UPI0004EE121F	InterPro:Znf_TAZ	SEG:seg	:

Description

BnaA06g39180DBnaA06g39180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JW93]

Coordinates

chrLK043021:+:66..981

Molecular Weight (calculated)

17910.1 Da

IEP (calculated)

9.888

GRAVY (calculated)

-0.416

Length

157 amino acids

Sequence
(BLAST)

001: MQLSEAMECI EHICTEGCTL VGPSSNLDNN KLKTGPCSAF STCYGLQLLI RHFAVCKKRV DGKGCIRCKR MIQLLRLHSS ICDQSESCRV PLCSRQFKQR
101: GEKDKKMVED TKWNVLVRRV ASAKAMSSLS QSKKKKSEVL LKEEAEDFIR IRKTKFF

Best Arabidopsis Sequence Match ( AT3G48360.1 )
(BLAST)

001: MEAVLVAMSV PATTEDDGFS LITDKLSYNL TPTSDVEIVT SDNRRIPAHS GVLASASPVL MNIMKKPMRR YRGCGSKRVI KILGVPCDAV SVFIKFLYSS
101: SLTEDEMERY GIHLLALSHV YMVTQLKQRC SKGVVQRLTT ENVVDVLQLA RLCDAPDVCL RSMRLIHSQF KTVEQTEGWK FIQEHDPFLE LDILQFIDDA
201: ESRKKRRRRH RKEQDLYMQL SEAMECIEHI CTQGCTLVGP SNVVDNNKKS MTAEKSEPCK AFSTCYGLQL LIRHFAVCKR RNNDKGCLRC KRMLQLFRLH
301: SLICDQPDSC RVPLCRQFRK RGEQDKKMGE DTKWKLLVTR VVSAKAMTSL CQSKKNKCEQ AQGV

Arabidopsis Description

BT2BTB/POZ and TAZ domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94BN0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.