CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY16196
CDY45004
CDY46437
CDY50732

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37610.1	CDY16196	AT1G26830.1	15772280
AT4G37610.1	CDY45004	AT1G26830.1	15772280
AT4G37610.1	CDY46437	AT1G26830.1	15772280
AT4G37610.1	CDY50732	AT1G26830.1	15772280

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017839.1-P	Field mustard	nucleus	100.0	100.0
CDX72641	Canola	nucleus, plastid	93.93	93.68
CDY50978	Canola	nucleus, plastid	84.43	85.56
CDX75666	Canola	nucleus	83.91	85.03
AT4G37610.1	Thale cress	nucleus	82.32	84.78
VIT_07s0129g00210.t01	Wine grape	cytosol, nucleus, plastid	54.09	55.26
CDY36495	Canola	cytosol	55.15	55.0
CDY08721	Canola	cytosol	54.62	54.47
Solyc02g092460.2.1	Tomato	mitochondrion, nucleus	39.05	51.57
KRH77116	Soybean	plastid	51.19	51.19
GSMUA_Achr6P24750_001	Banana	nucleus	46.44	46.32
PGSC0003DMT400055194	Potato	nucleus	45.91	46.03
CDY41504	Canola	nucleus	33.77	38.55
CDY10140	Canola	plastid	35.88	37.06
CDY48173	Canola	nucleus	34.3	35.81
CDY39576	Canola	nucleus	34.56	35.69
CDX84392	Canola	nucleus	34.04	35.64
CDY70710	Canola	nucleus	14.51	35.03
CDX86561	Canola	nucleus	37.99	34.37
CDY45741	Canola	nucleus	35.88	34.26
CDY15554	Canola	nucleus	37.99	33.96
CDY30743	Canola	nucleus	35.09	33.5

Protein Annotations

Gene3D:1.20.1020.10	Gene3D:1.25.40.420	MapMan:15.5.31	MapMan:19.2.2.8.2.2.4	Gene3D:3.30.710.10	GO:A0A078GYC3
UniProt:A0A078GYC3	InterPro:BTB/POZ_dom	EnsemblPlants:CDY29568	ProteinID:CDY29568	ProteinID:CDY29568.1	GO:GO:0003674
GO:GO:0003712	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016573	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00043289001	InterPro:IPR000197	InterPro:IPR000210
InterPro:IPR035898	PFAM:PF00651	PFAM:PF02135	PFscan:PS50097	PFscan:PS50134	PANTHER:PTHR24413
PANTHER:PTHR24413:SF145	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SMART:SM00551	InterPro:SPOP_C	SUPFAM:SSF54695
SUPFAM:SSF57933	InterPro:TAZ_dom_sf	UniParc:UPI0002540D52	InterPro:Znf_TAZ	SEG:seg	:

Description

BnaA03g54130DBnaA03g54130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GYC3]

Coordinates

chrLK032239:-:299197..300873

Molecular Weight (calculated)

43318.7 Da

IEP (calculated)

8.741

GRAVY (calculated)

-0.405

Length

379 amino acids

Sequence
(BLAST)

001: MENINTYSPE CSPVNVSLPP PPPPVKSNCG TKLKKSTDML LQKCNSFASK ATRDSWDRMF DEARGADVLI HTDDNGLIYA HSNVIGMASD VIRGMMKQDK
101: KKPHRKSISI LGVPHDAVRV FIRFLYSSCY EKQDMEDFAI HLLVLSHVYV VPHLKRVCES HYENTLLNKE NVIDVFQLAL LCDAPRLALL CHRMILNSFE
201: EVSTSEGWQA MKQSHPSLQK ELLRSVSYEL NNLKQKSRKQ KEIQTYTQLY DAMEAFVHIC RDGCREIGPT KIENPHASCG FQACDGLEQL LKHMAGCKLR
301: SIPGGCSRCK RMWQLLELHS RICVDSEQCR VPLCSDFKER MKKQSRKDEK RWKLLVKNVL STKRIGGSPY FLQAIDVTL

Best Arabidopsis Sequence Match ( AT4G37610.1 )
(BLAST)

001: MENMDDFSPE NVLAPPPPPP PMKKSTDLFM QRSNSFVSKA TRDSWDRMFD EAHGADVLIH TDDNGLIYAH SNVIGMASDV IRGMMKQHKR KSHRKSISIL
101: GVPHHALRVF IRFLYSSCYE KQDMEDFAIH LLVLSHVYVV PHLKRVCESE FESSLLNKEN VIDVFQLALL CDAPRLGLLC HRMILNNFEE VSTSEGWQAM
201: KESHPRLQKE LLRSVAYELN SLKQRNRKQK EIQTYTQLYE AMEAFVHICR DGCREIGPTK TETPHMSCGF QACNGLEQLL KHLAGCKLRS IPGGCSRCKR
301: MWQLLELHSR ICVDSEQCKV PLCSSLKERM KTQSRKDEKR WKLLVRNVLS TKRIGGSPFF LQAIDVTL

Arabidopsis Description

BT5BTB/POZ and TAZ domain-containing protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6EJ98]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.