Factsheet for Bra017839.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra016291.1-P
Bra024680.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37610.1	Bra016291.1-P	AT1G26830.1	15772280
AT4G37610.1	Bra024680.1-P	AT1G26830.1	15772280

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29568	Canola	nucleus	100.0	100.0
Bra011776.1-P	Field mustard	nucleus, plastid	84.17	85.29
AT4G37610.1	Thale cress	nucleus	82.32	84.78
VIT_07s0129g00210.t01	Wine grape	cytosol, nucleus, plastid	54.09	55.26
Bra024446.1-P	Field mustard	cytosol	54.62	54.47
Solyc02g092460.2.1	Tomato	mitochondrion, nucleus	39.05	51.57
KRH77116	Soybean	plastid	51.19	51.19
GSMUA_Achr6P24750_001	Banana	nucleus	46.44	46.32
PGSC0003DMT400055194	Potato	nucleus	45.91	46.03
Bra038612.1-P	Field mustard	nucleus	34.83	36.36
Bra029235.1-P	Field mustard	nucleus	34.56	35.6
Bra018065.1-P	Field mustard	nucleus	35.09	35.19
Bra030621.1-P	Field mustard	endoplasmic reticulum	38.52	31.74

Protein Annotations

Gene3D:1.20.1020.10	Gene3D:1.25.40.420	MapMan:15.5.31	MapMan:19.2.2.8.2.2.4	Gene3D:3.30.710.10	InterPro:BTB/POZ_dom
EnsemblPlantsGene:Bra017839	EnsemblPlants:Bra017839.1	EnsemblPlants:Bra017839.1-P	GO:GO:0003674	GO:GO:0003712	GO:GO:0003824
GO:GO:0004402	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016573	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000197	InterPro:IPR000210	InterPro:IPR035898	UniProt:M4DMV2	PFAM:PF00651
PFAM:PF02135	PFscan:PS50097	PFscan:PS50134	PANTHER:PTHR24413	PANTHER:PTHR24413:SF145	InterPro:SKP1/BTB/POZ_sf
SMART:SM00225	SMART:SM00551	InterPro:SPOP_C	SUPFAM:SSF54695	SUPFAM:SSF57933	InterPro:TAZ_dom_sf
UniParc:UPI0002540D52	InterPro:Znf_TAZ	SEG:seg	:	:	:

Description

AT4G37610 (E=1e-185) BT5 | BT5 (BTB AND TAZ DOMAIN PROTEIN 5); protein binding / transcription regulator

Coordinates

chrA03:-:30827541..30829159

Molecular Weight (calculated)

43318.7 Da

IEP (calculated)

8.741

GRAVY (calculated)

-0.405

Length

379 amino acids

Sequence
(BLAST)

001: MENINTYSPE CSPVNVSLPP PPPPVKSNCG TKLKKSTDML LQKCNSFASK ATRDSWDRMF DEARGADVLI HTDDNGLIYA HSNVIGMASD VIRGMMKQDK
101: KKPHRKSISI LGVPHDAVRV FIRFLYSSCY EKQDMEDFAI HLLVLSHVYV VPHLKRVCES HYENTLLNKE NVIDVFQLAL LCDAPRLALL CHRMILNSFE
201: EVSTSEGWQA MKQSHPSLQK ELLRSVSYEL NNLKQKSRKQ KEIQTYTQLY DAMEAFVHIC RDGCREIGPT KIENPHASCG FQACDGLEQL LKHMAGCKLR
301: SIPGGCSRCK RMWQLLELHS RICVDSEQCR VPLCSDFKER MKKQSRKDEK RWKLLVKNVL STKRIGGSPY FLQAIDVTL

Best Arabidopsis Sequence Match ( AT4G37610.1 )
(BLAST)

001: MENMDDFSPE NVLAPPPPPP PMKKSTDLFM QRSNSFVSKA TRDSWDRMFD EAHGADVLIH TDDNGLIYAH SNVIGMASDV IRGMMKQHKR KSHRKSISIL
101: GVPHHALRVF IRFLYSSCYE KQDMEDFAIH LLVLSHVYVV PHLKRVCESE FESSLLNKEN VIDVFQLALL CDAPRLGLLC HRMILNNFEE VSTSEGWQAM
201: KESHPRLQKE LLRSVAYELN SLKQRNRKQK EIQTYTQLYE AMEAFVHICR DGCREIGPTK TETPHMSCGF QACNGLEQLL KHLAGCKLRS IPGGCSRCKR
301: MWQLLELHSR ICVDSEQCKV PLCSSLKERM KTQSRKDEKR WKLLVRNVLS TKRIGGSPFF LQAIDVTL

Arabidopsis Description

BT5BTB/POZ and TAZ domain-containing protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6EJ98]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.