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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra016291.1-P
Bra024680.1-P
Bra034407.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G48360.1 Bra016291.1-P AT1G26830.1 15772280
AT3G48360.1 Bra024680.1-P AT1G26830.1 15772280
AT3G48360.1 Bra034407.1-P AT1G35670.1 19130088
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY48173 Canola nucleus 88.62 92.29
AT3G48360.1 Thale cress nucleus 70.9 73.63
Bra038612.1-P Field mustard nucleus 66.93 69.7
Bra029235.1-P Field mustard nucleus 65.61 67.39
PGSC0003DMT400069397 Potato nucleus 53.17 60.36
VIT_17s0000g09790.t01 Wine grape cytosol 55.03 59.94
Solyc06g071820.2.1 Tomato nucleus 54.5 59.03
KRH57174 Soybean cytosol 34.13 58.37
Solyc03g111710.2.1 Tomato nucleus 52.65 57.68
PGSC0003DMT400039384 Potato nucleus 52.65 57.68
Solyc06g071830.2.1 Tomato nucleus 48.68 55.26
PGSC0003DMT400069392 Potato nucleus 50.53 54.73
KRH03892 Soybean cytosol 49.74 54.34
KRH63672 Soybean nucleus 46.03 53.21
KRH37914 Soybean cytosol 12.43 47.0
GSMUA_AchrUn_... Banana nucleus 41.8 45.93
GSMUA_Achr11P... Banana nucleus 43.12 45.92
GSMUA_AchrUn_... Banana cytosol, mitochondrion, nucleus 42.59 45.61
Os01t0908200-01 Rice cytosol 39.42 42.94
GSMUA_Achr9P02050_001 Banana cytosol 38.62 42.82
Zm00001d042443_P001 Maize cytosol 38.89 42.73
HORVU3Hr1G092090.3 Barley mitochondrion, nucleus 21.69 41.62
EES01931 Sorghum cytosol 38.1 41.26
GSMUA_Achr6P12110_001 Banana nucleus 37.57 41.04
TraesCS3B01G448000.1 Wheat cytosol, plastid 37.04 40.46
TraesCS2A01G323000.1 Wheat cytosol 36.24 40.41
TraesCS3A01G413600.1 Wheat cytosol, plastid 37.04 40.23
TraesCS2D01G339900.1 Wheat cytosol 35.98 40.12
GSMUA_Achr6P12420_001 Banana nucleus 39.42 40.05
TraesCS3D01G408100.1 Wheat cytosol, plastid 36.77 39.83
TraesCS2B01G359600.1 Wheat cytosol 35.71 39.82
TraesCS3B01G448100.1 Wheat plastid 36.77 39.49
TraesCS3D01G408000.1 Wheat plastid 36.77 39.38
TraesCS2B01G359400.1 Wheat cytosol 35.19 38.44
TraesCS2A01G323200.1 Wheat cytosol 34.66 37.86
Zm00001d025707_P001 Maize cytosol 34.13 37.83
TraesCS3A01G413700.1 Wheat cytosol, plastid 34.92 37.61
HORVU2Hr1G083410.1 Barley cytosol 7.94 37.5
EES11006 Sorghum cytosol, endoplasmic reticulum, nucleus 34.66 36.19
Os04t0482300-01 Rice cytosol 33.86 36.06
EES05370 Sorghum plastid 33.07 35.11
Bra017839.1-P Field mustard nucleus 35.19 35.09
TraesCS2D01G339700.1 Wheat cytosol 34.92 34.83
Zm00001d017101_P001 Maize plastid 33.86 34.69
Bra011776.1-P Field mustard nucleus, plastid 33.86 34.22
Bra024446.1-P Field mustard cytosol 34.13 33.95
HORVU2Hr1G083430.3 Barley nucleus 12.7 27.43
Bra030621.1-P Field mustard endoplasmic reticulum 32.8 26.96
HORVU2Hr1G083490.1 Barley extracellular 5.03 21.84
Os02t0596700-00 Rice plastid 13.23 16.78
Protein Annotations
Gene3D:1.20.1020.10Gene3D:1.25.40.420MapMan:15.5.31MapMan:19.2.2.8.2.2.4Gene3D:3.30.710.10InterPro:BTB/POZ_dom
EnsemblPlantsGene:Bra018065EnsemblPlants:Bra018065.1EnsemblPlants:Bra018065.1-PGO:GO:0003674GO:GO:0003712GO:GO:0003824
GO:GO:0004402GO:GO:0005488GO:GO:0005515GO:GO:0005516GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0006139GO:GO:0006259GO:GO:0006355
GO:GO:0006464GO:GO:0006950GO:GO:0007154GO:GO:0007165GO:GO:0007275GO:GO:0007623
GO:GO:0008150GO:GO:0008152GO:GO:0008270GO:GO:0009058GO:GO:0009409GO:GO:0009553
GO:GO:0009555GO:GO:0009611GO:GO:0009628GO:GO:0009651GO:GO:0009719GO:GO:0009733
GO:GO:0009734GO:GO:0009737GO:GO:0009738GO:GO:0009743GO:GO:0009751GO:GO:0009753
GO:GO:0009987GO:GO:0010167GO:GO:0010182GO:GO:0016043GO:GO:0016573GO:GO:0016740
GO:GO:0019538GO:GO:0042542GO:GO:0051973InterPro:IPR000197InterPro:IPR000210InterPro:IPR035898
UniProt:M4DNH8PFAM:PF00651PFAM:PF02135PFscan:PS50097PANTHER:PTHR24413PANTHER:PTHR24413:SF75
InterPro:SKP1/BTB/POZ_sfSMART:SM00225SMART:SM00551InterPro:SPOP_CSUPFAM:SSF54695SUPFAM:SSF57933
InterPro:TAZ_dom_sfUniParc:UPI000253F314InterPro:Znf_TAZSEG:seg::
Description
AT3G48360 (E=5e-163) BT2, ATBT2 | BT2 (BTB AND TAZ DOMAIN PROTEIN 2); protein binding / transcription factor/ transcription regulator
Coordinates
chrA06:+:9953274..9955245
Molecular Weight (calculated)
42630.1 Da
IEP (calculated)
9.531
GRAVY (calculated)
-0.284
Length
378 amino acids
Sequence
(BLAST)
001: MEPVLVAMAV TATSEDDGFS LITDKVSYNL TASDVTIVTS GNRRIPAHSG ILASASPVLM NIMKKTVKRY QRYGAKRAIK ILGVPCDAVS VFIRFLYSSS
101: LTEDELEKYG IHLLALSHVY MVANLKQRCS RGVVDGLTAE NVVDVLQLAR LCDAPDVCLK SMRLIQSQFK TVEQTEGWKF LQEHDPVLEL DILQFIDDSE
201: SRKKRRRRHK KEQNLYMQLN EAMECIEHIC TQGCTLVGPT NIVGVNKSTT VPFGGKSKPC EAVSTCYGLQ LSIRHFAVCK KRSNENGCLR CKRMLQLLRL
301: HSSICDQPES CRVPLCRQFK KRVEQDKRMG EDTKWKLLVR RVVSAKAMSS LCQSSKKNKY DGEAEGLVRN RTGMRWGL
Best Arabidopsis Sequence Match ( AT3G48360.1 )
(BLAST)
001: MEAVLVAMSV PATTEDDGFS LITDKLSYNL TPTSDVEIVT SDNRRIPAHS GVLASASPVL MNIMKKPMRR YRGCGSKRVI KILGVPCDAV SVFIKFLYSS
101: SLTEDEMERY GIHLLALSHV YMVTQLKQRC SKGVVQRLTT ENVVDVLQLA RLCDAPDVCL RSMRLIHSQF KTVEQTEGWK FIQEHDPFLE LDILQFIDDA
201: ESRKKRRRRH RKEQDLYMQL SEAMECIEHI CTQGCTLVGP SNVVDNNKKS MTAEKSEPCK AFSTCYGLQL LIRHFAVCKR RNNDKGCLRC KRMLQLFRLH
301: SLICDQPDSC RVPLCRQFRK RGEQDKKMGE DTKWKLLVTR VVSAKAMTSL CQSKKNKCEQ AQGV
Arabidopsis Description
BT2BTB/POZ and TAZ domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94BN0]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.