Factsheet for Solyc06g071820.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g010820.2.1
Solyc02g093880.2.1
Solyc06g065380.2.1
Solyc11g018610.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48360.1	Solyc01g010820.2.1	AT1G26830.1	15772280
AT3G48360.1	Solyc06g065380.2.1	AT1G35670.1	19130088
AT3G48360.1	Solyc11g018610.1.1	AT1G35670.1	19130088
AT3G48360.1	Solyc02g093880.2.1	AT3G01770.1	15316289
AT3G48360.1	Solyc06g065380.2.1	AT4G09570.1	19130088
AT3G48360.1	Solyc11g018610.1.1	AT4G09570.1	19130088
AT5G63160.1	Solyc01g010820.2.1	AT1G26830.1	15772280
AT5G63160.1	Solyc02g093880.2.1	AT3G01770.1	15316289

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069397	Potato	nucleus	91.69	96.1
Solyc03g111710.2.1	Tomato	nucleus	74.5	75.36
Solyc06g071830.2.1	Tomato	nucleus	67.05	70.27
VIT_17s0000g09790.t01	Wine grape	cytosol	66.48	66.86
KRH63672	Soybean	nucleus	56.45	60.24
KRH57174	Soybean	cytosol	37.54	59.28
CDY41504	Canola	nucleus	55.87	58.73
KRH03892	Soybean	cytosol	57.88	58.38
Bra029235.1-P	Field mustard	nucleus	60.17	57.07
Bra038612.1-P	Field mustard	nucleus	59.31	57.02
CDX84392	Canola	nucleus	59.03	56.91
CDY48173	Canola	nucleus	59.03	56.75
AT5G63160.1	Thale cress	nucleus	58.74	56.16
AT3G48360.1	Thale cress	nucleus	57.59	55.22
Bra018065.1-P	Field mustard	nucleus	59.03	54.5
CDY39576	Canola	nucleus	56.73	53.95
CDY30743	Canola	nucleus	59.6	52.39
CDY45741	Canola	nucleus	59.31	52.14
CDY70710	Canola	nucleus	23.21	51.59
GSMUA_AchrUn_...	Banana	nucleus	47.85	48.55
GSMUA_Achr11P...	Banana	nucleus	49.0	48.17
KRH37914	Soybean	cytosol	13.75	48.0
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	47.85	47.31
GSMUA_Achr9P02050_001	Banana	cytosol	45.27	46.33
Solyc02g092460.2.1	Tomato	mitochondrion, nucleus	37.25	45.3
HORVU3Hr1G092090.3	Barley	mitochondrion, nucleus	25.5	45.18
Os01t0908200-01	Rice	cytosol	44.41	44.67
Zm00001d042443_P001	Maize	cytosol	43.55	44.19
HORVU2Hr1G083410.1	Barley	cytosol	10.03	43.75
EES01931	Sorghum	cytosol	42.98	42.98
TraesCS3D01G408100.1	Wheat	cytosol, plastid	42.98	42.98
GSMUA_Achr6P12110_001	Banana	nucleus	42.41	42.77
TraesCS2D01G339900.1	Wheat	cytosol	41.55	42.77
TraesCS2A01G323000.1	Wheat	cytosol	41.55	42.77
TraesCS3A01G413600.1	Wheat	cytosol, plastid	42.41	42.53
TraesCS3B01G448000.1	Wheat	cytosol, plastid	41.83	42.2
TraesCS3D01G408000.1	Wheat	plastid	42.41	41.93
TraesCS2B01G359600.1	Wheat	cytosol	40.69	41.89
TraesCS3B01G448100.1	Wheat	plastid	42.12	41.76
Os04t0482300-01	Rice	cytosol	42.12	41.41
GSMUA_Achr6P12420_001	Banana	nucleus	44.13	41.4
Zm00001d025707_P001	Maize	cytosol	40.11	41.06
TraesCS2A01G323200.1	Wheat	cytosol	40.11	40.46
TraesCS2B01G359400.1	Wheat	cytosol	40.11	40.46
TraesCS3A01G413700.1	Wheat	cytosol, plastid	40.4	40.17
EES05370	Sorghum	plastid	40.11	39.33
EES11006	Sorghum	cytosol, endoplasmic reticulum, nucleus	39.83	38.4
TraesCS2D01G339700.1	Wheat	cytosol	40.69	37.47
Zm00001d017101_P001	Maize	plastid	38.68	36.59
Solyc08g014440.2.1	Tomato	nucleus	37.82	34.83
HORVU2Hr1G083430.3	Barley	nucleus	14.9	29.71
Solyc12g019420.1.1	Tomato	cytosol	20.06	27.67
HORVU2Hr1G083490.1	Barley	extracellular	6.59	26.44
Os02t0596700-00	Rice	plastid	14.9	17.45

Protein Annotations

Gene3D:1.20.1020.10	Gene3D:1.25.40.420	MapMan:15.5.31	MapMan:19.2.2.8.2.2.4	Gene3D:3.30.710.10	InterPro:BTB/POZ_dom
GO:GO:0003674	GO:GO:0003712	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139
GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016573	GO:GO:0016740	GO:GO:0019005
GO:GO:0019538	GO:GO:0030162	GO:GO:0031625	GO:GO:0042787	GO:GO:0043161	InterPro:IPR000197
InterPro:IPR000210	InterPro:IPR035898	UniProt:K4C8Q4	PFAM:PF00651	PFAM:PF02135	PFscan:PS50097
PANTHER:PTHR24413	PANTHER:PTHR24413:SF75	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SMART:SM00551	InterPro:SPOP_C
SUPFAM:SSF54695	SUPFAM:SSF57933	EnsemblPlantsGene:Solyc06g071820.2	EnsemblPlants:Solyc06g071820.2.1	InterPro:TAZ_dom_sf	UniParc:UPI000276556A
InterPro:Znf_TAZ	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:44239402..44242925

Molecular Weight (calculated)

40174.1 Da

IEP (calculated)

9.279

GRAVY (calculated)

-0.360

Length

349 amino acids

Sequence
(BLAST)

001: MSSLNFSDGI DKFSGEMSEV DIQIVTSGGL RIPAHSAVLA AASTVLENIL ARPGKRRSSE RTIRILGVPC DAVSVFIRFL YSFKCTEEQM KRHGIHLLAL
101: SHVYLVPQLK QRCTKGLAER LTIENAVDLL QLARLCDAPD LYLKSMKFLS SNFKKVEETE GWKFLQHHDP WLELEILQFM DEAELRKKRT RRHKLERSLY
201: LQLSEAMDCL EHICTEGCTS VGPLDKEPSI KRQPCSKFDT CQGLQFLIRH FATCKRRTNG GCLRCKRMWQ ILRLHASICD QPNDCQVPLC RQFKLKVQQK
301: GDDELWKSLV RKVVSARAMS SLSLPKRKRE EEPKMDFNHH QVMNFRLAA

Best Arabidopsis Sequence Match ( AT5G63160.1 )
(BLAST)

001: MAITATQNDG VSLNANKISY DLVETDVEII TSGRRSIPAH SGILASVSPV LTNIIEKPRK IHGGSSKKVI KILGVPCDAV SVFVRFLYSP SVTENEMEKY
101: GIHLLALSHV YMVTQLKQRC TKGVGERVTA ENVVDILQLA RLCDAPDLCL KCMRFIHYKF KTVEQTEGWK FLQEHDPFLE LDILQFIDDA ESRKKRRRRH
201: RREQNLYLQL SEAMECIEHI CTEGCTLVGP SSNLDNKSTC QAKPGPCSAF STCYGLQLLI RHFAVCKKRV DGKGCVRCKR MIQLLRLHSS ICDQSESCRV
301: PLCRQYKNRG EKDKKMVEDT KWKVLVRRVA SAKAMSSLSQ SKKKKSEVLF KEEAEDLIRI RNKLM

Arabidopsis Description

BT1BTB/POZ and TAZ domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMK7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.