Factsheet for Solyc12g019420.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g010820.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05690.1	Solyc01g010820.2.1	AT1G26830.1	15772280

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013718	Potato	cytosol	64.82	62.12
Zm00001d035819_P001	Maize	extracellular	20.55	34.44
Zm00001d009478_P001	Maize	extracellular	20.16	33.12
Solyc08g014440.2.1	Tomato	nucleus	48.62	32.45
VIT_05s0094g00950.t01	Wine grape	cytosol, plastid	45.85	28.5
Zm00001d046179_P001	Maize	cytosol, endoplasmic reticulum	20.16	27.42
AT1G05690.1	Thale cress	plastid	39.13	27.2
TraesCS3A01G400400.1	Wheat	cytosol	39.53	25.25
TraesCS3B01G433400.1	Wheat	nucleus	39.13	24.75
CDX86561	Canola	nucleus	39.13	23.63
CDY10140	Canola	plastid	33.99	23.43
CDY15554	Canola	nucleus	38.74	23.11
GSMUA_Achr6P18360_001	Banana	plastid	34.78	23.04
HORVU3Hr1G090000.4	Barley	nucleus	38.34	22.66
OQU88021	Sorghum	nucleus	36.76	21.88
Os01t0893400-01	Rice	nucleus	35.18	21.55
Bra030621.1-P	Field mustard	endoplasmic reticulum	39.13	21.52
Solyc02g092460.2.1	Tomato	mitochondrion, nucleus	23.32	20.56
Zm00001d042549_P001	Maize	nucleus	34.78	20.14
Solyc06g071820.2.1	Tomato	nucleus	27.67	20.06
Solyc03g111710.2.1	Tomato	nucleus	26.48	19.42
Solyc06g071830.2.1	Tomato	nucleus	25.3	19.22

Protein Annotations

Gene3D:1.25.40.420	MapMan:15.5.31	MapMan:19.2.2.8.2.2.4	Gene3D:3.30.710.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019005	GO:GO:0019538
GO:GO:0030162	GO:GO:0031625	GO:GO:0042787	GO:GO:0043161	UniProt:K4DDG8	PANTHER:PTHR24413
PANTHER:PTHR24413:SF140	InterPro:SKP1/BTB/POZ_sf	InterPro:SPOP_C	SUPFAM:SSF54695	EnsemblPlantsGene:Solyc12g019420.1	EnsemblPlants:Solyc12g019420.1.1
UniParc:UPI000276984D	:	:	:	:	:

Description

No Description!

Coordinates

chr12:-:10234086..10236575

Molecular Weight (calculated)

29245.6 Da

IEP (calculated)

8.761

GRAVY (calculated)

-0.178

Length

253 amino acids

Sequence
(BLAST)

001: MDNLTKKLAG IVTFDSRKND LMGEDEPPPP PGKIYSKSIT HDTGHGKSYR VPKKTRDTWE KFIKYEYGED VHISTDNGSF IFAHSTLLRI ASPIMGNVVQ
101: QSKVKNCIRC IKILRFPHDA VFIFIRFLYS TCYNGYLKFI SPCLSYCNYG EREMKKFVLP LLVLSHSYLV PSLRRVCTRL FEQDRLNLDN IIDVLQLGRN
201: CDASRLIVVC IRMIVRNFIT ISSSEGWEVM RRTNPTLEQE LLQYVCDADL ITQ

Best Arabidopsis Sequence Match ( AT1G05690.1 )
(BLAST)

001: MSSSTKNIPK PPPLPCITYQ RFQSSTRKPS SLMRLVPKEA LETWDKLFKE GSGADTYVET DNKSHFPAHS SVLAAASPVI ATLLNQSRDK NGNTYLKIHG
101: VPCEAVYMFI RFLYSSCYEE EEMKKFVLHL LVLSHCYSVP SLKRLCVEIL DQGWINKENV IDVLQLARNC DVTRICFVCL SMVIKDFKSV SSTEGWKVMK
201: RSNPLLEQEL IEAVIESDSR KQERRRKLEE REVYLQLYEA MEALVHICRE GCGTIGPRDK ALKGSHTVCK FPACKGLEGA LRHFLGCKSR ASCSHCKRMW
301: QLLQLHSCIC DDSNSCKVSL CWNFKEKMKK LSKKEQSKWR LLVENIIRAR NSLGPFSSRS SGLI

Arabidopsis Description

BT3BTB/POZ and TAZ domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYL0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.