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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
EES05529

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G05690.1 EES05529 AT1G26830.1 15772280
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d009478_P001 Maize extracellular 26.59 73.38
Zm00001d042549_P001 Maize nucleus 75.06 73.0
Zm00001d035819_P001 Maize extracellular 24.71 69.54
TraesCS3A01G400400.1 Wheat cytosol 64.0 68.69
TraesCS3B01G433400.1 Wheat nucleus 64.47 68.5
Os01t0893400-01 Rice nucleus 63.76 65.62
HORVU3Hr1G090000.4 Barley nucleus 64.47 64.02
VIT_05s0094g00950.t01 Wine grape cytosol, plastid 53.18 55.53
GSMUA_Achr6P18360_001 Banana plastid 47.06 52.36
PGSC0003DMT400064939 Potato nucleus 48.24 50.87
AT1G05690.1 Thale cress plastid 42.59 49.73
Solyc08g014440.2.1 Tomato nucleus 43.53 48.81
Zm00001d046179_P001 Maize cytosol, endoplasmic reticulum 20.71 47.31
PGSC0003DMT400013718 Potato cytosol 26.82 43.18
CDX86561 Canola nucleus 41.88 42.48
CDY15554 Canola nucleus 42.35 42.45
CDY10140 Canola plastid 35.29 40.87
Bra030621.1-P Field mustard endoplasmic reticulum 41.88 38.7
Solyc12g019420.1.1 Tomato cytosol 21.88 36.76
EES01931 Sorghum cytosol 29.18 35.53
EES11006 Sorghum cytosol, endoplasmic reticulum, nucleus 28.94 33.98
EES05370 Sorghum plastid 25.18 30.06
Protein Annotations
Gene3D:1.20.1020.10Gene3D:1.25.40.420MapMan:15.5.31MapMan:19.2.2.8.2.2.4Gene3D:3.30.710.10EntrezGene:8078663
InterPro:BTB/POZ_domUniProt:C5XES2ProteinID:EES01891.1GO:GO:0003674GO:GO:0003712GO:GO:0003824
GO:GO:0004402GO:GO:0005488GO:GO:0005515GO:GO:0005516GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0006139GO:GO:0006355GO:GO:0006464
GO:GO:0006950GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0008270GO:GO:0009056
GO:GO:0009058GO:GO:0009409GO:GO:0009553GO:GO:0009555GO:GO:0009628GO:GO:0009651
GO:GO:0009719GO:GO:0009723GO:GO:0009751GO:GO:0009987GO:GO:0016043GO:GO:0016573
GO:GO:0016740GO:GO:0019005GO:GO:0019538GO:GO:0030162GO:GO:0031625GO:GO:0042542
GO:GO:0042787GO:GO:0043161InterPro:IPR000197InterPro:IPR000210InterPro:IPR035898EnsemblPlants:OQU88021
ProteinID:OQU88021ProteinID:OQU88021.1ProteinID:OQU88022.1ProteinID:OQU88023.1PFAM:PF00651PFAM:PF02135
PFscan:PS50097PFscan:PS50134PANTHER:PTHR24413PANTHER:PTHR24413:SF140InterPro:SKP1/BTB/POZ_sfSMART:SM00225
SMART:SM00551EnsemblPlantsGene:SORBI_3003G385100InterPro:SPOP_CSUPFAM:SSF54695SUPFAM:SSF57933InterPro:TAZ_dom_sf
UniParc:UPI0001A85032RefSeq:XP_002456771.1InterPro:Znf_TAZSEG:seg::
Description
hypothetical protein
Coordinates
chr3:+:69763472..69771009
Molecular Weight (calculated)
48312.2 Da
IEP (calculated)
8.571
GRAVY (calculated)
-0.219
Length
425 amino acids
Sequence
(BLAST)
001: MECLEFDCSD LFLDGDAIDF PLEIHLESNS SAGAKAAPDH RRHAQLHRSK APDPPPLPGT SYDAWRISRK AKACRRVPEG VVDSWDRLFL QGYQSDLRVW
101: TDDDTEILSH SCVLGVKSPV LRAMLEEAKL KDGFRCIRIS GAPSEAVCVF IRFLYSSRFE QEQMKKHVLH LLVLSHVFSV PSLKTVCIDQ LERNFLAPDN
201: VVDMLQLARL CDAPRLSLVC TRMIIGDFKT ISLTDGWKVM RRVNPTMEQE LLESLVETDT KRQERAKRME EKKVYLQLHE AMEALVHICR DGCRTIGPRD
301: QALKGSLAAA CKFPACKGIE LLVRHFSTCR VRVPGGCANC KRMWQLLELH SRMCFIPDTC KVPLCRHFKE KMRNLGRKEE TKWNLLVCKV LESRGTMAFM
401: PERRKKLSIL TPAGSCHVAP LVGPI
Best Arabidopsis Sequence Match ( AT1G05690.1 )
(BLAST)
001: MSSSTKNIPK PPPLPCITYQ RFQSSTRKPS SLMRLVPKEA LETWDKLFKE GSGADTYVET DNKSHFPAHS SVLAAASPVI ATLLNQSRDK NGNTYLKIHG
101: VPCEAVYMFI RFLYSSCYEE EEMKKFVLHL LVLSHCYSVP SLKRLCVEIL DQGWINKENV IDVLQLARNC DVTRICFVCL SMVIKDFKSV SSTEGWKVMK
201: RSNPLLEQEL IEAVIESDSR KQERRRKLEE REVYLQLYEA MEALVHICRE GCGTIGPRDK ALKGSHTVCK FPACKGLEGA LRHFLGCKSR ASCSHCKRMW
301: QLLQLHSCIC DDSNSCKVSL CWNFKEKMKK LSKKEQSKWR LLVENIIRAR NSLGPFSSRS SGLI
Arabidopsis Description
BT3BTB/POZ and TAZ domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYL0]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.