Factsheet for PGSC0003DMT400064939

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400016765

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05690.1	PGSC0003DMT400016765	AT1G26830.1	15772280

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g014440.2.1	Tomato	nucleus	87.84	93.4
VIT_05s0094g00950.t01	Wine grape	cytosol, plastid	66.0	65.36
Zm00001d009478_P001	Maize	extracellular	23.08	60.39
PGSC0003DMT400013718	Potato	cytosol	38.21	58.33
Zm00001d035819_P001	Maize	extracellular	20.84	55.63
AT1G05690.1	Thale cress	plastid	50.12	55.49
TraesCS3A01G400400.1	Wheat	cytosol	50.37	51.26
GSMUA_Achr6P18360_001	Banana	plastid	48.14	50.79
TraesCS3B01G433400.1	Wheat	nucleus	50.37	50.75
OQU88021	Sorghum	nucleus	50.87	48.24
Os01t0893400-01	Rice	nucleus	49.38	48.18
PGSC0003DMT400055194	Potato	nucleus	44.66	47.62
HORVU3Hr1G090000.4	Barley	nucleus	49.88	46.96
Zm00001d042549_P001	Maize	nucleus	50.62	46.68
CDX86561	Canola	nucleus	48.14	46.3
CDY10140	Canola	plastid	41.69	45.78
CDY15554	Canola	nucleus	47.64	45.28
PGSC0003DMT400069397	Potato	nucleus	35.24	42.64
Bra030621.1-P	Field mustard	endoplasmic reticulum	47.89	41.96
PGSC0003DMT400039384	Potato	nucleus	34.49	40.29
PGSC0003DMT400069392	Potato	nucleus	34.74	40.11
Zm00001d046179_P001	Maize	cytosol, endoplasmic reticulum	16.38	35.48

Protein Annotations

Gene3D:1.20.1020.10	Gene3D:1.25.40.420	EntrezGene:102583750	MapMan:15.5.31	MapMan:19.2.2.8.2.2.4	Gene3D:3.30.710.10
InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0003712	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488
GO:GO:0005515	GO:GO:0005516	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0006464	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009409	GO:GO:0009553	GO:GO:0009555
GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009723	GO:GO:0009751	GO:GO:0009987
GO:GO:0016043	GO:GO:0016573	GO:GO:0016740	GO:GO:0019538	GO:GO:0042542	InterPro:IPR000197
InterPro:IPR000210	InterPro:IPR035898	UniProt:M1CD51	PFAM:PF00651	PFAM:PF02135	EnsemblPlantsGene:PGSC0003DMG400025221
PGSC:PGSC0003DMG400025221	EnsemblPlants:PGSC0003DMT400064939	PFscan:PS50097	PFscan:PS50134	PANTHER:PTHR24413	PANTHER:PTHR24413:SF140
InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SMART:SM00551	InterPro:SPOP_C	SUPFAM:SSF54695	SUPFAM:SSF57933
InterPro:TAZ_dom_sf	UniParc:UPI0002959A59	RefSeq:XP_006351059.1	InterPro:Znf_TAZ	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400025221]

Coordinates

chr8:-:7752283..7757496

Molecular Weight (calculated)

45251.0 Da

IEP (calculated)

8.667

GRAVY (calculated)

-0.124

Length

403 amino acids

Sequence
(BLAST)

001: MASPDLHTSW LSAAVESFGG SFNIRIEEGA ADSVEFFEDP TSPVCNLPTN IPKPPPVTGK IQSRATVPRQ LANSDCVPKD TWDRLFKEGF GADVHVIAEN
101: GSVIPAHYAL LTVASPVLGN LLQQSKVRNG IRCIKIAGVP HGAVYVFIRF LYSACYDEGD VKKFVLHLLV LSHFYSVPSL KRVCINHLEQ GWLTLDNVID
201: VLQLARDCDA PRLTLFCIRM VVGNFKSISS TEGWKVMRRA NPALEQELLE FVVEADTRKQ DRLKKIEEKK VYLQLHEAME ALVHICRDGC RTIGPHDKVL
301: KASQEACSFP ACKGLESLVR HFSNCKIKVP GGCVRCKRMW QIFELHSRIC EEPDSCKVPL CSHFKEKMLQ QTKKDEVKWK VLVSKVRAAR NAVSLFSSRR
401: SSF

Best Arabidopsis Sequence Match ( AT1G05690.1 )
(BLAST)

001: MSSSTKNIPK PPPLPCITYQ RFQSSTRKPS SLMRLVPKEA LETWDKLFKE GSGADTYVET DNKSHFPAHS SVLAAASPVI ATLLNQSRDK NGNTYLKIHG
101: VPCEAVYMFI RFLYSSCYEE EEMKKFVLHL LVLSHCYSVP SLKRLCVEIL DQGWINKENV IDVLQLARNC DVTRICFVCL SMVIKDFKSV SSTEGWKVMK
201: RSNPLLEQEL IEAVIESDSR KQERRRKLEE REVYLQLYEA MEALVHICRE GCGTIGPRDK ALKGSHTVCK FPACKGLEGA LRHFLGCKSR ASCSHCKRMW
301: QLLQLHSCIC DDSNSCKVSL CWNFKEKMKK LSKKEQSKWR LLVENIIRAR NSLGPFSSRS SGLI

Arabidopsis Description

BT3BTB/POZ and TAZ domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYL0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.