Factsheet for PGSC0003DMT400016765

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000952
PGSC0003DMT400011115
PGSC0003DMT400013718
PGSC0003DMT400039384
PGSC0003DMT400051857
PGSC0003DMT400055194
PGSC0003DMT400058456
PGSC0003DMT400058484
PGSC0003DMT400064939
PGSC0003DMT400069392
PGSC0003DMT400069397
PGSC0003DMT400069942
PGSC0003DMT400070468
PGSC0003DMT400072227
PGSC0003DMT400082384

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26830.1	PGSC0003DMT400013718	AT1G05690.1	15772280
AT1G26830.1	PGSC0003DMT400064939	AT1G05690.1	15772280
AT1G26830.1	PGSC0003DMT400058484	AT2G26990.1	12615944
AT1G26830.1	PGSC0003DMT400072227	AT2G26990.1	12615944
AT1G26830.1	PGSC0003DMT400082384	AT2G26990.1	12615944
AT1G26830.1	PGSC0003DMT400069942	AT2G39760.1	15618422
AT1G26830.1	PGSC0003DMT400069942	AT2G39760.1	15659098
AT1G26830.1	PGSC0003DMT400069942	AT2G39760.1	15772280
AT1G26830.1	PGSC0003DMT400011115	AT3G06190.1	15772280
AT1G26830.1	PGSC0003DMT400058456	AT3G43700.1	15772280
AT1G26830.1	PGSC0003DMT400070468	AT3G43700.1	15772280
AT1G26830.1	PGSC0003DMT400039384	AT3G48360.1	15772280
AT1G26830.1	PGSC0003DMT400069392	AT3G48360.1	15772280
AT1G26830.1	PGSC0003DMT400069397	AT3G48360.1	15772280
AT1G26830.1	PGSC0003DMT400000952	AT4G07670.1	15749712
AT1G26830.1	PGSC0003DMT400055194	AT4G37610.1	15772280
AT1G26830.1	PGSC0003DMT400051857	AT5G13060.1	15659098
AT1G26830.1	PGSC0003DMT400039384	AT5G63160.1	15772280
AT1G26830.1	PGSC0003DMT400069392	AT5G63160.1	15772280
AT1G26830.1	PGSC0003DMT400069397	AT5G63160.1	15772280
AT1G69670.1	PGSC0003DMT400069942	AT2G39760.1	15618422
AT1G69670.1	PGSC0003DMT400069942	AT2G39760.1	15659098
AT1G69670.1	PGSC0003DMT400000952	AT4G07670.1	15749712
AT1G69670.1	PGSC0003DMT400051857	AT5G13060.1	15659098

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g010820.2.1	Tomato	cytosol	99.05	99.05
VIT_01s0026g02230.t01	Wine grape	cytosol	88.01	88.13
PGSC0003DMT400003338	Potato	cytosol	86.38	86.49
KRH45896	Soybean	cytosol	85.56	85.79
KRG99095	Soybean	cytosol	85.29	85.52
AT1G26830.1	Thale cress	cytosol	83.79	84.02
AT1G69670.1	Thale cress	cytosol	83.24	83.47
Bra016291.1-P	Field mustard	cytosol	83.11	83.33
CDY46437	Canola	cytosol	82.97	83.2
CDY50732	Canola	cytosol	82.83	83.06
CDY16196	Canola	cytosol	82.83	83.06
CDY45004	Canola	cytosol	82.7	82.92
Bra024680.1-P	Field mustard	cytosol	82.56	82.79
GSMUA_Achr7P18000_001	Banana	cytosol	79.02	81.92
GSMUA_Achr8P16990_001	Banana	cytosol	78.88	81.78
GSMUA_AchrUn_...	Banana	cytosol	78.88	81.78
TraesCS6D01G285800.1	Wheat	cytosol	81.2	80.98
TraesCS6B01G335200.1	Wheat	cytosol	81.2	80.98
EES05529	Sorghum	cytosol	81.06	80.84
TraesCS6A01G306600.1	Wheat	cytosol	81.06	80.84
Os02t0746000-01	Rice	cytosol	80.65	80.43
Zm00001d018043_P001	Maize	cytosol	80.38	80.16
GSMUA_AchrUn_...	Banana	cytosol	64.85	80.0
HORVU6Hr1G075720.2	Barley	cytosol	80.65	79.36
KRH70713	Soybean	cytosol	74.39	75.1
PGSC0003DMT400013645	Potato	cytosol	4.9	46.15
PGSC0003DMT400023105	Potato	cytosol	27.52	35.63
PGSC0003DMT400097727	Potato	cytosol	8.17	34.88
PGSC0003DMT400029607	Potato	cytosol	34.33	34.1
PGSC0003DMT400061802	Potato	cytosol	34.06	34.01
PGSC0003DMT400074970	Potato	cytosol	13.49	33.11
PGSC0003DMT400023111	Potato	cytosol	32.7	32.52
PGSC0003DMT400022865	Potato	cytosol	32.56	32.52
PGSC0003DMT400038140	Potato	cytosol	7.63	24.67
PGSC0003DMT400085888	Potato	cytosol	4.5	23.91
PGSC0003DMT400063662	Potato	cytosol	6.95	17.59

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	EntrezGene:102605397	MapMan:19.2.2.8.2.1	InterPro:Cullin_N
InterPro:Cullin_homology	InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0019538	GO:GO:0031625	InterPro:IPR016158	InterPro:IPR036388	UniProt:M1A843	PFAM:PF00888
PFAM:PF10557	EnsemblPlantsGene:PGSC0003DMG400006555	PGSC:PGSC0003DMG400006555	EnsemblPlants:PGSC0003DMT400016765	PFscan:PS50069	PANTHER:PTHR11932
PANTHER:PTHR11932:SF95	SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF74788	SUPFAM:SSF75632
UniParc:UPI000295EAC6	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_006366700.1	SEG:seg	:

Description

ATCUL3/ATCUL3A/CUL3/CUL3A [Source:PGSC_GENE;Acc:PGSC0003DMG400006555]

Coordinates

chr1:+:41852128..41860190

Molecular Weight (calculated)

85489.1 Da

IEP (calculated)

7.781

GRAVY (calculated)

-0.498

Length

734 amino acids

Sequence
(BLAST)

001: MSSNQKKRNF QIEAFKHKVV VDPKYADKTW KILEHAIHEI YNHNASGLSF EELYRNAYNM VLHKFGEKLY SGLVFTITFH LQRISKSIES AQGDLFLEEL
101: NRQWADHNKA LQMIRDILMY MDRTFIPSTH KTPVHELGLN LWRDNIVRSS NIQMRLLSTL LELILKERDG EVINRGLMRN IIKMFMDLGP SVYQEDFEKP
201: FLEISADFYR AESQKFIECC DCGDYLKKAE KRLTEEIERV SHYLDPKTEA KITNVVEKEM IENHMPRLVH MENSGLVNML LDDKYEDLRR MYNLFRRVTN
301: GLATIRDVMT SHIREIGKQL VTDPEKLKDP VEFVQCLLNE KDKYDNVIIL AFNNDKTFQN ALNSSFEFFI NLNPRSPEFI SLFVDEKLRK GLKGVSEEDV
401: EVILDKVMML FRYLQEKDVF EKYYKQHLAK RLLSGKTVSD DAERSLIVKL KTECGYQFTS KLEGMFTDMK TSQDTMQGFH TAYGAELGDG PSLVVQVLTT
501: GSWPTQPGVT CNLPAELSAL CEKFRSYYLG THTGRRLSWQ TNMGTADLKA TFGKGQKHEL NVSTYQMCVL MLFNNADRLM YKEIEQATEI PSSDLKRCLQ
601: SLACVKGKNV LRKEPMSKDI GEDDAFFVND KFTSKFYKVK IGTVVAQKES EPEKQETRQR VEEDRKPQIE AAIVRIMKSR KVLDHNNIIA EVTKQLQPRF
701: LANPGEIKKR IESLIERDFL ERDNADRRLY RYLA

Best Arabidopsis Sequence Match ( AT1G26830.1 )
(BLAST)

001: MSNQKKRNFQ IEAFKHRVVV DPKYADKTWQ ILERAIHQIY NQDASGLSFE ELYRNAYNMV LHKFGEKLYT GFIATMTSHL KEKSKLIEAA QGGSFLEELN
101: KKWNEHNKAL EMIRDILMYM DRTYIESTKK THVHPMGLNL WRDNVVHFTK IHTRLLNTLL DLVQKERIGE VIDRGLMRNV IKMFMDLGES VYQEDFEKPF
201: LDASSEFYKV ESQEFIESCD CGDYLKKSEK RLTEEIERVA HYLDAKSEEK ITSVVEKEMI ANHMQRLVHM ENSGLVNMLL NDKYEDLGRM YNLFRRVTNG
301: LVTVRDVMTS HLREMGKQLV TDPEKSKDPV EFVQRLLDER DKYDKIINTA FGNDKTFQNA LNSSFEYFIN LNARSPEFIS LFVDDKLRKG LKGITDVDVE
401: VILDKVMMLF RYLQEKDVFE KYYKQHLAKR LLSGKTVSDD AERSLIVKLK TECGYQFTSK LEGMFTDMKT SEDTMRGFYG SHPELSEGPT LIVQVLTTGS
501: WPTQPAVPCN LPAEVSVLCE KFRSYYLGTH TGRRLSWQTN MGTADIKAIF GKGQKHELNV STFQMCVLML FNNSDRLSYK EIEQATEIPA ADLKRCLQSL
601: ACVKGKNVIK KEPMSKDIGE EDLFVVNDKF TSKFYKVKIG TVVAQKETEP EKQETRQRVE EDRKPQIEAA IVRIMKSRKI LDHNNIIAEV TKQLQPRFLA
701: NPTEIKKRIE SLIERDFLER DSTDRKLYRY LA

Arabidopsis Description

CUL3ACUL3A [Source:UniProtKB/TrEMBL;Acc:A0A178WM88]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.