Factsheet for PGSC0003DMT400051857

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
cytosol 2
extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400016765
PGSC0003DMT400028257
PGSC0003DMT400033353
PGSC0003DMT400033355
PGSC0003DMT400039751
PGSC0003DMT400039753

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13060.1	PGSC0003DMT400016765	AT1G26830.1	15659098
AT5G13060.1	PGSC0003DMT400016765	AT1G69670.1	15659098
AT5G13060.1	PGSC0003DMT400028257	AT2G31270.1	18818695
AT5G13060.1	PGSC0003DMT400033353	AT4G14700.1	18818695
AT5G13060.1	PGSC0003DMT400033355	AT4G14700.1	18818695
AT5G13060.1	PGSC0003DMT400039751	AT5G16690.1	18818695
AT5G13060.1	PGSC0003DMT400039753	AT5G16690.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0398100-01	Rice	cytosol	47.54	38.84
CDX70871	Canola	cytosol	40.98	28.09
GSMUA_Achr10P...	Banana	endoplasmic reticulum	49.73	23.33
PGSC0003DMT400051860	Potato	cytosol	66.67	17.21
PGSC0003DMT400033530	Potato	cytosol	61.2	15.82
GSMUA_Achr2P00090_001	Banana	cytosol	14.75	14.44
GSMUA_Achr10P...	Banana	cytosol	15.3	14.0
HORVU1Hr1G062160.1	Barley	cytosol	51.91	13.19
TraesCS1A01G249400.1	Wheat	cytosol	52.46	13.11
TraesCS1B01G260100.1	Wheat	cytosol	52.46	12.94
TraesCS1D01G248900.1	Wheat	cytosol	51.91	12.8
GSMUA_Achr9P17600_001	Banana	cytosol	51.91	12.77
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	30.05	12.67
EES19490	Sorghum	nucleus	51.37	12.62
KRG95533	Soybean	cytosol	47.54	12.2
KRH67208	Soybean	cytosol	45.36	11.77
Zm00001d038134_P001	Maize	cytosol	50.27	11.57
GSMUA_Achr2P00160_001	Banana	cytosol, extracellular	15.3	11.29
Zm00001d010341_P002	Maize	cytosol	44.81	10.69
Bra023389.1-P	Field mustard	plastid	34.43	9.68
Bra008860.1-P	Field mustard	plastid	35.52	9.19
AT5G13060.1	Thale cress	cytosol, mitochondrion, plastid	33.33	8.28
GSMUA_Achr10P...	Banana	cytosol	6.01	6.36
GSMUA_Achr2P00100_001	Banana	cytosol	5.46	5.38
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane	4.92	4.46
Bra030036.1-P	Field mustard	plastid	3.83	3.89

Protein Annotations

EnsemblPlants:PGSC0003DMT400051857	EnsemblPlantsGene:PGSC0003DMG402020126	Gene3D:3.30.710.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:BTB/POZ_dom	InterPro:IPR000210	InterPro:SKP1/BTB/POZ_sf	PANTHER:PTHR23315	PANTHER:PTHR23315:SF164	PFAM:PF00651
PFscan:PS50097	PGSC:PGSC0003DMG402020126	SEG:seg	SMART:SM00225	SUPFAM:SSF54695	UniParc:UPI0002969AB0
UniProt:M1BSC4	MapMan:35.1	:	:	:	:

Description

Armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG402020126]

Coordinates

chr6:+:59098338..59101102

Molecular Weight (calculated)

20658.3 Da

IEP (calculated)

4.425

GRAVY (calculated)

0.253

Length

183 amino acids

Sequence
(BLAST)

001: MLVIPAVGME TMLTSICGLL VELSRLVTLL VYLGEQQRVL CPQNCLLSSY DAFRVMFDGG YRERDAKDIE IPNIPWDVFE LMMRYIYTGS VDVNMDVAQD
101: LLRAADQYLL KGLKHLCEYA IAQVSAGDLS VLGEDLCQVS PDNFLSSVGY LSTKMYSQLI QRLIPETRAY FVRVLSRPIQ ADL

Best Arabidopsis Sequence Match ( AT5G19330.1 )
(BLAST)

001: MDQQPERREG RSFPERKGQK RKLEEGAAAV EDREISAVST DGGQALLSEV AAQVSVLNSA FSWQESDRAA AKRATQVLAE LAKNEDLVNV IVDGGAVPAL
101: MTHLQAPPYN DGDLAEKPYE HEVEKGSAFA LGLLAIKPEY QKLIVDKGAL PHLVNLLKRN KDGSSSRAVN SVIRRAADAI TNLAHENSSI KTRVRVEGGI
201: PPLVELLEFS DSKVQRAAAG ALRTLAFKND DNKNQIVECN ALPTLILMLG SEDAAIHYEA VGVIGNLVHS SPHIKKEVLT AGALQPVIGL LSSCCPESQR
301: EAALLLGQFA STDSDCKVHI VQRGAVRPLI EMLQSPDVQL KEMSAFALGR LAQDAHNQAG IAHSGGLGPL LKLLDSRNGS LQHNAAFALY GLADNEDNVS
401: DFIRVGGIQK LQDGEFIVQA TKDCVSKTLK RLEEKIHGRV LRHLLYLMRI SEKSIQRRVA LALAHLCSPE DQRTIFIDDN GLELLLGLLG SLNTKQQLDG
501: AAALYKLANK SMALSPVDAA PPSPTQRVYL GEQYVNNATL SDVTFLVEGR TFYAHRICLL ASSDAFRAMF DGGYREKDAR DIEIPNIKWE VFELMMRFIY
601: TGSVDITNEI SKDLLRAADQ YLLEGLKRLC EYTIAQDITL ESIGDMYELS EAFHAMSLRQ ACIMFILEHF DKLSSMPWQN ELVQRTIPEI REYFCRALTK
701: STTNLQSLRL

Arabidopsis Description

ARIAARM REPEAT PROTEIN INTERACTING WITH ABF2 [Source:UniProtKB/Swiss-Prot;Acc:B9DHT4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.