Factsheet for GSMUA_Achr9P17600_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P17940_001
GSMUA_Achr7P18000_001
GSMUA_Achr8P03390_001
GSMUA_Achr8P16990_001
GSMUA_Achr8P31340_001
GSMUA_Achr9P25190_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13060.1	GSMUA_Achr7P18000_001	AT1G26830.1	15659098
AT5G13060.1	GSMUA_Achr8P16990_001	AT1G26830.1	15659098
AT5G13060.1	GSMUA_AchrUn_...	AT1G26830.1	15659098
AT5G13060.1	GSMUA_AchrUn_...	AT1G26830.1	15659098
AT5G13060.1	GSMUA_Achr7P18000_001	AT1G69670.1	15659098
AT5G13060.1	GSMUA_Achr8P16990_001	AT1G69670.1	15659098
AT5G13060.1	GSMUA_AchrUn_...	AT1G69670.1	15659098
AT5G13060.1	GSMUA_AchrUn_...	AT1G69670.1	15659098
AT5G13060.1	GSMUA_Achr10P...	AT2G31270.1	18818695
AT5G13060.1	GSMUA_Achr8P03390_001	AT2G31270.1	18818695
AT5G13060.1	GSMUA_Achr9P25190_001	AT2G31270.1	18818695
AT5G13060.1	GSMUA_Achr8P31340_001	AT4G14700.1	18818695
AT5G13060.1	GSMUA_Achr2P17940_001	AT5G16690.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0398100-01	Rice	cytosol	25.13	83.48
HORVU1Hr1G062160.1	Barley	cytosol	78.09	80.69
TraesCS1A01G249400.1	Wheat	cytosol	79.03	80.33
GSMUA_Achr10P...	Banana	cytosol	10.08	79.79
TraesCS1B01G260100.1	Wheat	cytosol	79.44	79.65
TraesCS1D01G248900.1	Wheat	cytosol	79.3	79.51
VIT_05s0020g03020.t01	Wine grape	cytosol	75.4	78.68
EES19490	Sorghum	nucleus	78.63	78.52
KRH27617	Soybean	cytosol	74.6	78.39
KRH77872	Soybean	cytosol	74.33	78.33
KRG91259	Soybean	cytosol	73.52	77.37
KRH35552	Soybean	cytosol	72.98	76.8
AT5G19330.1	Thale cress	cytosol	73.12	76.62
CDX92539	Canola	cytosol	71.77	76.18
Bra002228.1-P	Field mustard	nucleus	73.52	75.55
PGSC0003DMT400051860	Potato	cytosol	71.37	74.89
GSMUA_Achr10P...	Banana	endoplasmic reticulum	39.25	74.87
CDX88895	Canola	cytosol, nucleus, plastid	71.64	74.55
PGSC0003DMT400033530	Potato	cytosol	70.83	74.44
Solyc09g065210.2.1	Tomato	cytosol	70.83	74.44
Bra006500.1-P	Field mustard	cytosol, nucleus, plastid	71.51	74.41
Solyc06g084250.2.1	Tomato	cytosol	70.43	74.33
VIT_07s0104g00020.t01	Wine grape	cytosol	68.95	72.77
Zm00001d038134_P001	Maize	cytosol	77.15	72.2
Zm00001d010341_P002	Maize	cytosol	73.92	71.71
GSMUA_Achr10P...	Banana	cytosol	15.46	66.47
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	25.0	66.43
GSMUA_Achr10P...	Banana	cytosol	17.2	64.0
GSMUA_Achr2P00160_001	Banana	cytosol, extracellular	21.24	63.71
GSMUA_Achr2P00090_001	Banana	cytosol	15.73	62.57
GSMUA_Achr2P00100_001	Banana	cytosol	14.92	59.68
CDX70871	Canola	cytosol	21.1	58.8
KRH67208	Soybean	cytosol	55.65	58.72
KRG95533	Soybean	cytosol	55.91	58.34
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane	14.92	54.95
CDX69674	Canola	cytosol	51.08	53.75
CDX97221	Canola	cytosol, mitochondrion	50.67	53.32
AT5G13060.1	Thale cress	cytosol, mitochondrion, plastid	51.88	52.37
PGSC0003DMT400051857	Potato	endoplasmic reticulum	12.77	51.91
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	29.97	51.38
CDX91149	Canola	cytosol, mitochondrion	50.27	51.3
Bra008860.1-P	Field mustard	plastid	48.52	51.06
CDX85673	Canola	plastid	50.27	51.02
Bra023389.1-P	Field mustard	plastid	42.07	48.08
CDY51336	Canola	mitochondrion	13.71	43.59
GSMUA_Achr2P00150_001	Banana	cytosol, extracellular, plastid	3.63	42.86
CDY13990	Canola	nucleus	71.51	42.06
CDY15719	Canola	plastid	7.12	38.13
GSMUA_Achr2P00070_001	Banana	extracellular	7.66	37.25
Bra030036.1-P	Field mustard	plastid	8.87	36.67
GSMUA_Achr10P...	Banana	extracellular	4.44	31.73
GSMUA_Achr10P...	Banana	cytosol	3.49	31.33
GSMUA_Achr2P00050_001	Banana	extracellular, plasma membrane	1.61	8.28

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.710.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr9G17600_001	EnsemblPlants:GSMUA_Achr9P17600_001
EnsemblPlants:GSMUA_Achr9T17600_001	InterPro:IPR000210	InterPro:IPR000225	InterPro:IPR011989	UniProt:M0U167	PFAM:PF00514
PFAM:PF00651	PFscan:PS50097	PFscan:PS50176	PANTHER:PTHR23315	PANTHER:PTHR23315:SF164	InterPro:SKP1/BTB/POZ_sf
SMART:SM00185	SMART:SM00225	SUPFAM:SSF48371	SUPFAM:SSF54695	UniParc:UPI000296E3DB	SEG:seg

Description

Putative Vacuolar protein 8 [Source:GMGC_GENE;Acc:GSMUA_Achr9G17600_001]

Coordinates

chr9:-:12198691..12208914

Molecular Weight (calculated)

82126.7 Da

IEP (calculated)

7.598

GRAVY (calculated)

-0.042

Length

744 amino acids

Sequence
(BLAST)

001: MEAEQQRPRR KGQKRKLEED VAAAVSSAAS ICCHRSQKTL AREVRTQVEV LERSFSWRLI DRAAAKRATH ILAELAKNEE VVNVIVEGGA VPALVKHLEE
101: PPPLLAREGS AAGGDRPFEH EVEKGSAFAL GLLAVKPEHQ QLIVDAGALR LLVNLLRRHK KGSNCRAVNS VIRRAADAIT NLAHENSNIK TYVRIEGGIP
201: PLVELLESTD LKVQRAAAGA LRTLAFKNDG NKNQIVECNA LPTLILMLRS EDAAIHYEAA CSTFQMILLS LLMRDGFMLI HVSLVPPYSP IAFLEPVGVI
301: GNLVHSSPNI KKEVLLAGAL QPVIGLLSSC CTESQREAAL LLGQFASADS DCKVHIVQRG AVRPLIEMLQ SPDIQLKEMS AFALGRLAQD SHNQAGIVYN
401: GGLVPLLKLL DSKNGSLQHN AAFALYGIAD NEDNVSDFIK VGGVQKLQDG EFIVQATKDC VAKTLKRLEE KIIGRVLMHL LYLMRIGEKV VQRRVALALA
501: HLCSPGDQRT IFVDNNGLDL LLDLLGSTNL KQQQDGSVAL YKLANKAMTL SSMDAAPPSP TPQVYLGEQY VNSSTLSDVT FLVEGKRFYA HRIALLASSD
601: AFRAMFDGGY REKDARDIEI PNIRWEVFEL MMRQVQFIYT GSVEVTTNIA QDLLRAADQY LLEGLKRLCE YAIAQDVNID NISSMYELSE AFHAMSLRHT
701: CVLFILEQFD KISIQPGHSH LIQRIIPEIR NYFAKALRPN PRNS

Best Arabidopsis Sequence Match ( AT5G19330.1 )
(BLAST)

001: MDQQPERREG RSFPERKGQK RKLEEGAAAV EDREISAVST DGGQALLSEV AAQVSVLNSA FSWQESDRAA AKRATQVLAE LAKNEDLVNV IVDGGAVPAL
101: MTHLQAPPYN DGDLAEKPYE HEVEKGSAFA LGLLAIKPEY QKLIVDKGAL PHLVNLLKRN KDGSSSRAVN SVIRRAADAI TNLAHENSSI KTRVRVEGGI
201: PPLVELLEFS DSKVQRAAAG ALRTLAFKND DNKNQIVECN ALPTLILMLG SEDAAIHYEA VGVIGNLVHS SPHIKKEVLT AGALQPVIGL LSSCCPESQR
301: EAALLLGQFA STDSDCKVHI VQRGAVRPLI EMLQSPDVQL KEMSAFALGR LAQDAHNQAG IAHSGGLGPL LKLLDSRNGS LQHNAAFALY GLADNEDNVS
401: DFIRVGGIQK LQDGEFIVQA TKDCVSKTLK RLEEKIHGRV LRHLLYLMRI SEKSIQRRVA LALAHLCSPE DQRTIFIDDN GLELLLGLLG SLNTKQQLDG
501: AAALYKLANK SMALSPVDAA PPSPTQRVYL GEQYVNNATL SDVTFLVEGR TFYAHRICLL ASSDAFRAMF DGGYREKDAR DIEIPNIKWE VFELMMRFIY
601: TGSVDITNEI SKDLLRAADQ YLLEGLKRLC EYTIAQDITL ESIGDMYELS EAFHAMSLRQ ACIMFILEHF DKLSSMPWQN ELVQRTIPEI REYFCRALTK
701: STTNLQSLRL

Arabidopsis Description

ARIAARM REPEAT PROTEIN INTERACTING WITH ABF2 [Source:UniProtKB/Swiss-Prot;Acc:B9DHT4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.