Factsheet for VIT_05s0020g03020.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77872	Soybean	cytosol	83.17	83.99
KRH27617	Soybean	cytosol	83.17	83.76
KRH35552	Soybean	cytosol	82.33	83.03
KRG91259	Soybean	cytosol	82.19	82.89
AT5G19330.1	Thale cress	cytosol	79.1	79.44
CDX92539	Canola	cytosol	77.7	79.03
Bra002228.1-P	Field mustard	nucleus	79.24	78.04
CDX88895	Canola	cytosol, nucleus, plastid	77.84	77.62
Bra006500.1-P	Field mustard	cytosol, nucleus, plastid	77.7	77.48
GSMUA_Achr9P17600_001	Banana	cytosol	78.68	75.4
HORVU1Hr1G062160.1	Barley	cytosol	75.88	75.14
EES19490	Sorghum	nucleus	78.12	74.77
VIT_07s0104g00020.t01	Wine grape	cytosol	73.77	74.61
TraesCS1A01G249400.1	Wheat	cytosol	76.16	74.18
TraesCS1B01G260100.1	Wheat	cytosol	76.3	73.32
Os05t0398100-01	Rice	cytosol	23.0	73.21
TraesCS1D01G248900.1	Wheat	cytosol	76.16	73.18
Zm00001d038134_P001	Maize	cytosol	77.7	69.69
Zm00001d010341_P002	Maize	cytosol	73.91	68.71
GSMUA_Achr10P...	Banana	endoplasmic reticulum	37.31	68.21
GSMUA_Achr10P...	Banana	cytosol	16.13	66.47
GSMUA_Achr10P...	Banana	cytosol	17.25	61.5
GSMUA_Achr2P00160_001	Banana	cytosol, extracellular	21.04	60.48
GSMUA_Achr2P00090_001	Banana	cytosol	15.57	59.36
GSMUA_Achr2P00100_001	Banana	cytosol	15.43	59.14
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane	15.29	53.96
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	29.59	48.62
CDY13990	Canola	nucleus	77.42	43.64

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100249437	wikigene:100249437	Gene3D:3.30.710.10	MapMan:35.1	EMBL:AM433721
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	InterPro:BTB/POZ_dom	ProteinID:CAN75981	ProteinID:CAN75981.1
ProteinID:CCB50403	ProteinID:CCB50403.1	UniProt:F6HDN2	EMBL:FN595749	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005886	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0009628	GO:GO:0009651
GO:GO:0009719	GO:GO:0009737	GO:GO:0009791	GO:GO:0010187	GO:GO:0016020	InterPro:IPR000210
InterPro:IPR000225	InterPro:IPR011989	EntrezGene:LOC100249437	wikigene:LOC100249437	PFAM:PF00514	PFAM:PF00651
PFscan:PS50097	PFscan:PS50176	PANTHER:PTHR23315	PANTHER:PTHR23315:SF164	InterPro:SKP1/BTB/POZ_sf	SMART:SM00185
SMART:SM00225	SUPFAM:SSF48371	SUPFAM:SSF54695	UniParc:UPI0002109E20	ArrayExpress:VIT_05s0020g03020	EnsemblPlantsGene:VIT_05s0020g03020
EnsemblPlants:VIT_05s0020g03020.t01	RefSeq:XP_002281388	RefSeq:XP_002281388.1	RefSeq:XP_002281401	RefSeq:XP_002281401.1	SEG:seg

Description

No Description!

Coordinates

chr5:-:4747935..4764285

Molecular Weight (calculated)

78317.0 Da

IEP (calculated)

6.322

GRAVY (calculated)

-0.132

Length

713 amino acids

Sequence
(BLAST)

001: MELQKRQDQG QPERKGQKRK LEEEFEEERE ISVAPSGEAH QALSCEVSAQ VNILNTTFSW KEADRAAAKR ATHVLAELAK NEEVVNVIVD GGAVPALVKH
101: LQAPPSSDGD HDQRPFEHEV EKGSAFALGL LAVKPEHQQL IVDNGALSHL VDLLKRHRDG SNSRAVNSVI RRAADAVTNL AHENSSIKTR VRMEGGIPPL
201: VQLLEFADTK VQRAAAGALR TLAFKNDENK NQIVECNALP TLILMLRSED AAIHYEAVGV IGNLVHSSPN IKKEVLLAGA LQPVIGLLSS CCSESQREAA
301: LLLGQFAATD SDCKVHIAQR GAVRPLIEML QSADVQLREM SAFALGRLAQ DTHNQAGIAH NGGLVPLLKL LDSKNGSLQH NAAFALYGLA DNEDNVSDFI
401: KVGGVQKLQD GEFIVQATKD CVAKTLKRLE EKIHGRVLNH LLYLMRVSEK AVQRRVALAL AHLCSADDQR TIFIDNNGLE LLLGLLGSSS PKQQLDGSVA
501: LYKLANKAMT LSPVDAAPPS PTPQVYLGEQ YVNSATLSDV TFLVGGKRFY AHRICLLASS DAFRAMFDGG YREKDARDIE IPNIRWEVFE LMMRFIYTGS
601: VEITLDIAQD LLRAADQYLL EGLKRLCEYT IAQDISLENV SSMYELSEAF HAISLRHTCI LFILEQFSKL SSRPGTYQKV VDLRGGGEQV EGSNWLIVVW
701: PKCFADSRVL LLA

Best Arabidopsis Sequence Match ( AT5G19330.1 )
(BLAST)

001: MDQQPERREG RSFPERKGQK RKLEEGAAAV EDREISAVST DGGQALLSEV AAQVSVLNSA FSWQESDRAA AKRATQVLAE LAKNEDLVNV IVDGGAVPAL
101: MTHLQAPPYN DGDLAEKPYE HEVEKGSAFA LGLLAIKPEY QKLIVDKGAL PHLVNLLKRN KDGSSSRAVN SVIRRAADAI TNLAHENSSI KTRVRVEGGI
201: PPLVELLEFS DSKVQRAAAG ALRTLAFKND DNKNQIVECN ALPTLILMLG SEDAAIHYEA VGVIGNLVHS SPHIKKEVLT AGALQPVIGL LSSCCPESQR
301: EAALLLGQFA STDSDCKVHI VQRGAVRPLI EMLQSPDVQL KEMSAFALGR LAQDAHNQAG IAHSGGLGPL LKLLDSRNGS LQHNAAFALY GLADNEDNVS
401: DFIRVGGIQK LQDGEFIVQA TKDCVSKTLK RLEEKIHGRV LRHLLYLMRI SEKSIQRRVA LALAHLCSPE DQRTIFIDDN GLELLLGLLG SLNTKQQLDG
501: AAALYKLANK SMALSPVDAA PPSPTQRVYL GEQYVNNATL SDVTFLVEGR TFYAHRICLL ASSDAFRAMF DGGYREKDAR DIEIPNIKWE VFELMMRFIY
601: TGSVDITNEI SKDLLRAADQ YLLEGLKRLC EYTIAQDITL ESIGDMYELS EAFHAMSLRQ ACIMFILEHF DKLSSMPWQN ELVQRTIPEI REYFCRALTK
701: STTNLQSLRL

Arabidopsis Description

ARIAARM REPEAT PROTEIN INTERACTING WITH ABF2 [Source:UniProtKB/Swiss-Prot;Acc:B9DHT4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.