Factsheet for VIT_07s0104g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g02230.t01
VIT_06s0004g00530.t01
VIT_06s0004g02050.t01
VIT_07s0005g03090.t01
VIT_13s0175g00030.t01
VIT_16s0039g01430.t01
VIT_16s0039g01440.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13060.1	VIT_01s0026g02230.t01	AT1G26830.1	15659098
AT5G13060.1	VIT_01s0026g02230.t01	AT1G69670.1	15659098
AT5G13060.1	VIT_07s0005g03090.t01	AT2G31270.1	18818695
AT5G13060.1	VIT_06s0004g00530.t01	AT4G14700.1	18818695
AT5G13060.1	VIT_06s0004g02050.t01	AT4G14700.1	18818695
AT5G13060.1	VIT_13s0175g00030.t01	AT4G14700.1	18818695
AT5G13060.1	VIT_16s0039g01430.t01	AT5G16690.1	18818695
AT5G13060.1	VIT_16s0039g01440.t01	AT5G16690.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033530	Potato	cytosol	76.6	76.27
Solyc06g084250.2.1	Tomato	cytosol	76.17	76.17
PGSC0003DMT400051860	Potato	cytosol	76.6	76.16
Solyc09g065210.2.1	Tomato	cytosol	76.45	76.13
VIT_05s0020g03020.t01	Wine grape	cytosol	74.61	73.77
Os05t0398100-01	Rice	cytosol	23.26	73.21
HORVU1Hr1G062160.1	Barley	cytosol	71.21	69.72
GSMUA_Achr9P17600_001	Banana	cytosol	72.77	68.95
TraesCS1A01G249400.1	Wheat	cytosol	71.35	68.72
EES19490	Sorghum	nucleus	71.91	68.05
TraesCS1B01G260100.1	Wheat	cytosol	71.49	67.92
TraesCS1D01G248900.1	Wheat	cytosol	71.35	67.79
GSMUA_Achr10P...	Banana	endoplasmic reticulum	36.31	65.64
Zm00001d038134_P001	Maize	cytosol	71.77	63.65
Zm00001d010341_P002	Maize	cytosol	68.37	62.84
GSMUA_Achr10P...	Banana	cytosol	17.16	60.5
KRG95533	Soybean	cytosol	60.85	60.17
GSMUA_Achr10P...	Banana	cytosol	14.47	58.96
GSMUA_Achr2P00090_001	Banana	cytosol	15.6	58.82
KRH67208	Soybean	cytosol	58.72	58.72
GSMUA_Achr2P00160_001	Banana	cytosol, extracellular	19.86	56.45
CDX70871	Canola	cytosol	20.85	55.06
CDX69674	Canola	cytosol	54.47	54.31
CDX97221	Canola	cytosol, mitochondrion	54.04	53.89
AT5G13060.1	Thale cress	cytosol, mitochondrion, plastid	55.46	53.05
Bra008860.1-P	Field mustard	plastid	52.2	52.05
CDX85673	Canola	plastid	54.04	51.98
CDX91149	Canola	cytosol, mitochondrion	53.48	51.71
GSMUA_Achr2P00100_001	Banana	cytosol	13.48	51.08
Bra023389.1-P	Field mustard	plastid	45.11	48.85
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane	13.9	48.51
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	27.94	45.39
CDY51336	Canola	mitochondrion	13.9	41.88
Bra030036.1-P	Field mustard	plastid	9.22	36.11
CDY15719	Canola	plastid	7.09	35.97

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100251186	wikigene:100251186	Gene3D:3.30.710.10	MapMan:35.1	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	InterPro:BTB/POZ_dom	ProteinID:CCB56840	ProteinID:CCB56840.1	UniProt:F6HQ83
EMBL:FN596005	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
GO:GO:0016020	GO:GO:0016021	InterPro:IPR000210	InterPro:IPR000225	InterPro:IPR011989	EntrezGene:LOC100251186
wikigene:LOC100251186	PFAM:PF00514	PFAM:PF00651	PFscan:PS50097	PFscan:PS50176	PANTHER:PTHR23315
PANTHER:PTHR23315:SF164	InterPro:SKP1/BTB/POZ_sf	SMART:SM00185	SMART:SM00225	SUPFAM:SSF48371	SUPFAM:SSF54695
UniParc:UPI0002108027	ArrayExpress:VIT_07s0104g00020	EnsemblPlantsGene:VIT_07s0104g00020	EnsemblPlants:VIT_07s0104g00020.t01	RefSeq:XP_002272541	RefSeq:XP_002272541.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7:+:1339352..1346941

Molecular Weight (calculated)

78078.6 Da

IEP (calculated)

6.676

GRAVY (calculated)

-0.038

Length

705 amino acids

Sequence
(BLAST)

001: MEKVGVASAR KSLKRKLEEE FEEDGRLDAL SQPHALRELV REVGVHVSVL NSAISSSEAD RSAAKRAVHV LTELAKNDEI ANVIVDCQVV PALVGHLQSP
101: PPLVEGDSSP IPFEHEVEKG CALALGLLAV KPEHQQLIVD AGALPHLVEL LKRHRSGYKT RAVNSVVRRA ADAITNLAHE NSNIKTRVRI EGGIPPLVEL
201: LKFIDTKVQK AAAGALRTLA FKNDENKNQI VECNALPMLI LMLRSEDTGV HYEAIGVIGN LVHSSPNIKK DVLFAGALQP VIELLRSSCS ESQREAALLL
301: GQFAAADSDC KAHIVQRGAV QPLIDMLQSP DVQLREMSAF ALGRLAQDHH NQAGIAHNGG MVPLLKLLDS RNGSLQHNAA FALYGLADNE DNVADLVRVG
401: GVQKLQEGVF NAQPTKDCVA KTLKRLEEKI HGRVMNHLLY LMRVAEKSVQ RRVVLALAHL CSLEHQKIIF IDGHGLELLL ELLESTSVKH QQDASVALYK
501: LANKATSLCV VDAAPLSPTP QVYLGEQYVN NSTLSDVTFL VEGRKRFYAH RICLLASSDA FRAMFDGGYR EKDAQDIEIP NIRWDVFELM MRYIYTGSVD
601: VNLDIAQDLL RAADQYLLEG LKRLCEYAIA QDISVENVSL MYELSEAFNA MTLRHTCILY ILEHFEKLTV KPWYSRLIQC ILPEIRKFFR EALTKPVEPV
701: LTLST

Best Arabidopsis Sequence Match ( AT5G19330.1 )
(BLAST)

001: MDQQPERREG RSFPERKGQK RKLEEGAAAV EDREISAVST DGGQALLSEV AAQVSVLNSA FSWQESDRAA AKRATQVLAE LAKNEDLVNV IVDGGAVPAL
101: MTHLQAPPYN DGDLAEKPYE HEVEKGSAFA LGLLAIKPEY QKLIVDKGAL PHLVNLLKRN KDGSSSRAVN SVIRRAADAI TNLAHENSSI KTRVRVEGGI
201: PPLVELLEFS DSKVQRAAAG ALRTLAFKND DNKNQIVECN ALPTLILMLG SEDAAIHYEA VGVIGNLVHS SPHIKKEVLT AGALQPVIGL LSSCCPESQR
301: EAALLLGQFA STDSDCKVHI VQRGAVRPLI EMLQSPDVQL KEMSAFALGR LAQDAHNQAG IAHSGGLGPL LKLLDSRNGS LQHNAAFALY GLADNEDNVS
401: DFIRVGGIQK LQDGEFIVQA TKDCVSKTLK RLEEKIHGRV LRHLLYLMRI SEKSIQRRVA LALAHLCSPE DQRTIFIDDN GLELLLGLLG SLNTKQQLDG
501: AAALYKLANK SMALSPVDAA PPSPTQRVYL GEQYVNNATL SDVTFLVEGR TFYAHRICLL ASSDAFRAMF DGGYREKDAR DIEIPNIKWE VFELMMRFIY
601: TGSVDITNEI SKDLLRAADQ YLLEGLKRLC EYTIAQDITL ESIGDMYELS EAFHAMSLRQ ACIMFILEHF DKLSSMPWQN ELVQRTIPEI REYFCRALTK
701: STTNLQSLRL

Arabidopsis Description

ARIAARM REPEAT PROTEIN INTERACTING WITH ABF2 [Source:UniProtKB/Swiss-Prot;Acc:B9DHT4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.