Factsheet for Zm00001d038134_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018043_P001
Zm00001d031073_P001
Zm00001d037086_P006
Zm00001d045080_P001
Zm00001d045354_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13060.1	Zm00001d018043_P001	AT1G26830.1	15659098
AT5G13060.1	Zm00001d018043_P001	AT1G69670.1	15659098
AT5G13060.1	Zm00001d045354_P002	AT2G31270.1	18818695
AT5G13060.1	Zm00001d037086_P006	AT4G14700.1	18818695
AT5G13060.1	Zm00001d045080_P001	AT4G14700.1	18818695
AT5G13060.1	Zm00001d031073_P001	AT5G16690.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19490	Sorghum	nucleus	89.06	95.03
Zm00001d010341_P002	Maize	cytosol	84.78	87.87
Os05t0398100-01	Rice	cytosol	23.65	83.93
HORVU1Hr1G062160.1	Barley	cytosol	75.47	83.33
TraesCS1A01G249400.1	Wheat	cytosol	76.23	82.79
TraesCS1B01G260100.1	Wheat	cytosol	76.73	82.21
TraesCS1D01G248900.1	Wheat	cytosol	76.48	81.94
VIT_05s0020g03020.t01	Wine grape	cytosol	69.69	77.7
GSMUA_Achr9P17600_001	Banana	cytosol	72.2	77.15
KRH77872	Soybean	cytosol	66.92	75.35
KRH27617	Soybean	cytosol	66.79	75.0
KRH35552	Soybean	cytosol	66.16	74.4
CDX92539	Canola	cytosol	65.41	74.18
AT5G19330.1	Thale cress	cytosol	66.16	74.08
KRG91259	Soybean	cytosol	65.79	73.97
Bra002228.1-P	Field mustard	nucleus	67.04	73.62
CDX88895	Canola	cytosol, nucleus, plastid	65.79	73.15
Bra006500.1-P	Field mustard	cytosol, nucleus, plastid	65.66	73.01
PGSC0003DMT400051860	Potato	cytosol	64.53	72.36
VIT_07s0104g00020.t01	Wine grape	cytosol	63.65	71.77
PGSC0003DMT400033530	Potato	cytosol	63.9	71.75
Solyc06g084250.2.1	Tomato	cytosol	63.52	71.63
Solyc09g065210.2.1	Tomato	cytosol	63.77	71.61
CDX70871	Canola	cytosol	19.5	58.05
KRH67208	Soybean	cytosol	50.19	56.6
KRG95533	Soybean	cytosol	50.44	56.24
CDX97221	Canola	cytosol, mitochondrion	47.92	53.89
CDX69674	Canola	cytosol	47.8	53.75
AT5G13060.1	Thale cress	cytosol, mitochondrion, plastid	48.55	52.37
Bra008860.1-P	Field mustard	plastid	45.91	51.63
CDX91149	Canola	cytosol, mitochondrion	47.04	51.3
CDX85673	Canola	plastid	47.17	51.16
PGSC0003DMT400051857	Potato	endoplasmic reticulum	11.57	50.27
Bra023389.1-P	Field mustard	plastid	39.75	48.54
CDY51336	Canola	mitochondrion	12.33	41.88
CDY13990	Canola	nucleus	65.28	41.03
CDY15719	Canola	plastid	6.54	37.41
Bra030036.1-P	Field mustard	plastid	8.3	36.67
Zm00001d019441_P001	Maize	cytosol	8.81	20.0
Zm00001d019513_P001	Maize	cytosol	8.68	19.66
Zm00001d036641_P001	Maize	cytosol	9.18	19.26
Zm00001d036646_P002	Maize	cytosol	8.43	18.82
Zm00001d036647_P001	Maize	plastid	7.67	17.94
Zm00001d036643_P002	Maize	cytosol	8.18	17.91
Zm00001d046968_P001	Maize	cytosol	8.05	17.58
Zm00001d023740_P001	Maize	cytosol	8.05	17.39
Zm00001d012798_P001	Maize	cytosol	5.79	16.08

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:103630332	Gene3D:3.30.710.10	MapMan:35.1	UniProt:A0A1D6M3M1	ProteinID:AQK85765.1
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000210	InterPro:IPR000225	InterPro:IPR011989	PFAM:PF00514	PFAM:PF00651
PFscan:PS50097	PFscan:PS50176	PANTHER:PTHR23315	PANTHER:PTHR23315:SF164	InterPro:SKP1/BTB/POZ_sf	SMART:SM00185
SMART:SM00225	SUPFAM:SSF48371	SUPFAM:SSF54695	UniParc:UPI0008432CFC	EnsemblPlantsGene:Zm00001d038134	EnsemblPlants:Zm00001d038134_P001
EnsemblPlants:Zm00001d038134_T001	SEG:seg	:	:	:	:

Description

ARM REPEAT PROTEIN INTERACTING WITH ABF2

Coordinates

chr6:-:148972280..148984090

Molecular Weight (calculated)

87183.5 Da

IEP (calculated)

7.404

GRAVY (calculated)

-0.195

Length

795 amino acids

Sequence
(BLAST)

001: MEAEQQKQQR PRQRPRRKGQ KRKLEDEASA ATAAAASSLG SAGADDDNEE EDGSAGTPEI CRHSHAALAR EVRAQVDVLI RCASSWRHAD RAAAKRATHV
101: LAELAKNGNL PSPNLIPAAP IRAPASLPSG SGGSWWLSRA EEVVNMIVEG GAVAALVCHL EEPAVAAQTQ EEQQLRPFEL EVEKGAAFTL GLLAVKPEHQ
201: QFIVDAGALP PLVKLLKRQR STTNSRMVNS VIKRAADAIT NLAHENSNIK TRVRMEGGIP PLVELLESQD LKVQRAAAGA LRTLAFKNDE NKTQIVQCNA
301: LPTLILMLRS EDAAIHYEAV GVIGNLVHSS PNIKKEVLNA GALQPVIGLL RASDKIRVKF SSMIADSFWL CSCRSCCTES QREAALLLGQ FASADSDCKV
401: HIVQRGAVRP LIEMLQSADV QLREMSAFAL GRLAQDTHNQ AGIAYNGGLV PLFKLLDSKN GSLQHNAAFA LYGVADNEDY VSDFIKVGGV QKLQDGEFIV
501: QATKDCVAKT LKRLEEKING RVLKHLLYLM RVGEQSVQRR VALALAHLCA PEDQRAIFID NNGLDLLLDL LISMSPKHQQ DGSAALYKLA NKAAALSPMD
601: AAPPSPTPQV YLGEQYVNSS TLSDVTFLVE GKRFYAHRIA LLASSDAFRA MFDGGYREKD ARDIEIPNIR WEVFELMMRF IYTGSVQINS EISQDLLRAA
701: DQYLLEGLKR LCEYTIAKDV NLDNVSDMYD LSEAFHAVSL RHTCILYILE HFNKICTRAG SAQLIQRVIP EIRNFLTKAL NSSRSPSPSD RNSQT

Best Arabidopsis Sequence Match ( AT5G13060.1 )
(BLAST)

001: MIISKSFKAP LKFSVKSSTA PVISNHPPME NHPKRQRTTR LAARNLKRKL SHNTDGAPIV TQLIDIDDEP IDLVVAIRRH VEVLNSSFSD PDFDHEAVKE
101: AAADIADLAK IDENVEIIVE NGAIPALVRY LESPLVVCGN VPKSCEHKLE KDCALALGLI AAIQPGYQQL IVDAGAIVPT VKLLKRRGEC GECMFANAVI
201: RRAADIITNI AHDNPRIKTN IRVEGGIAPL VELLNFPDVK VQRAAAGALR TVSFRNDENK SQIVELNALP TLVLMLQSQD STVHGEAIGA IGNLVHSSPD
301: IKKEVIRAGA LQPVIGLLSS TCLETQREAA LLIGQFAAPD SDCKVHIAQR GAITPLIKML ESSDEQVVEM SAFALGRLAQ DAHNQAGIAH RGGIISLLNL
401: LDVKTGSVQH NAAFALYGLA DNEENVADFI KAGGIQKLQD DNFTVQPTRD CVVRTLKRLQ NKIHGPVLNQ LLYLMRTAEK TVQIRIALAL AHLCDPKDGK
501: LIFIDNNGVE FLLELLYFSS NKQQRYSSSA LYELAKKATS FAPEDSAPCS PTQQVFLGEK FVNNPTMSDV TFLIDGKQFY AHKIGLVASS DIFRAMFDGL
601: YKERNAQNVE IPNIRWEVFE LMMKFIYSGR INIAKHLAKD LLVAADQYLL EGLKRQCEYT IAQEICLDNI PEMYELADTF NASALRRACT LFVLEHFTKL
701: SSQLWFAKFV KQIIPEIRSY MTDILTRPVE ASPPTVV

Arabidopsis Description

ABAP1ARMADILLO BTB ARABIDOPSIS PROTEIN 1 [Source:UniProtKB/Swiss-Prot;Acc:B7U179]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.