Factsheet for Zm00001d037086_P006

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d006113_P001
Zm00001d007868_P001
Zm00001d010341_P002
Zm00001d013119_P001
Zm00001d017423_P001
Zm00001d018806_P001
Zm00001d021127_P001
Zm00001d022226_P002
Zm00001d022256_P001
Zm00001d023639_P002
Zm00001d031073_P001
Zm00001d034353_P001
Zm00001d038134_P001
Zm00001d045354_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12620.1	Zm00001d022226_P002	AT1G26840.1	16179646
AT4G12620.1	Zm00001d017423_P001	AT2G37560.1	16179646
AT4G12620.1	Zm00001d010341_P002	AT5G13060.1	18818695
AT4G12620.1	Zm00001d038134_P001	AT5G13060.1	18818695
AT4G14700.1	Zm00001d007868_P001	AT1G30210.1	18818695
AT4G14700.1	Zm00001d013119_P001	AT1G30210.1	18818695
AT4G14700.1	Zm00001d018806_P001	AT1G30210.1	18818695
AT4G14700.1	Zm00001d022256_P001	AT1G30210.1	18818695
AT4G14700.1	Zm00001d034353_P001	AT1G30210.1	18818695
AT4G14700.1	Zm00001d023639_P002	AT3G04620.1	20706207
AT4G14700.1	Zm00001d045354_P002	AT3G54710.1	18818695
AT4G14700.1	Zm00001d006113_P001	AT4G16630.1	20706207
AT4G14700.1	Zm00001d021127_P001	AT4G16630.1	20706207
AT4G14700.1	Zm00001d010341_P002	AT5G13060.1	18818695
AT4G14700.1	Zm00001d038134_P001	AT5G13060.1	18818695
AT4G14700.1	Zm00001d031073_P001	AT5G16690.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU75979	Sorghum	plastid	80.79	88.27
Zm00001d045080_P001	Maize	plastid	79.77	86.31
TraesCS7A01G151700.1	Wheat	plastid	69.15	78.16
TraesCS7D01G153500.1	Wheat	plastid	72.88	77.8
TraesCS7B01G055600.1	Wheat	nucleus	73.45	73.36
HORVU7Hr1G031190.2	Barley	nucleus	72.77	68.08
GSMUA_Achr8P31340_001	Banana	nucleus	57.51	63.62
VIT_06s0004g00530.t01	Wine grape	cytosol	46.21	63.31
PGSC0003DMT400033355	Potato	cytosol	6.1	59.34
KRH23133	Soybean	nucleus	56.38	58.64
Solyc03g006420.2.1	Tomato	nucleus	54.69	58.24
PGSC0003DMT400033353	Potato	nucleus, plastid	48.25	57.09
KRH10202	Soybean	nucleus	54.69	56.67
AT4G14700.1	Thale cress	plastid	51.75	56.61
CDY16697	Canola	plastid	50.96	55.75
CDY62377	Canola	plastid	51.19	55.51
Bra029471.1-P	Field mustard	plastid	50.96	55.47
AT4G12620.1	Thale cress	plastid	50.85	55.35
VIT_06s0004g02050.t01	Wine grape	nucleus	55.48	54.07
VIT_13s0175g00030.t01	Wine grape	extracellular	7.68	43.31
Zm00001d042810_P001	Maize	plastid	12.43	22.49
Zm00001d012320_P002	Maize	plastid	12.43	22.45

Protein Annotations

Gene3D:1.10.8.1280	EntrezGene:100280350	MapMan:13.2.1.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.300	UniProt:A0A1D6LTU1
InterPro:AAA+_ATPase	ProteinID:AQK82815.1	InterPro:ATPase_AAA_core	InterPro:BAH_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003682	GO:GO:0005488	GO:GO:0005524	GO:GO:0046872	InterPro:IPR001025	InterPro:IPR013083
InterPro:IPR019787	InterPro:ORC1	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF00628	PFAM:PF01426
ScanProsite:PS01359	PFscan:PS50016	PFscan:PS51038	PANTHER:PTHR10763	PANTHER:PTHR10763:SF23	SMART:SM00249
SMART:SM00382	SMART:SM00439	SUPFAM:SSF52540	SUPFAM:SSF57903	UniParc:UPI0008437DC6	InterPro:Zinc_finger_PHD-type_CS
EnsemblPlantsGene:Zm00001d037086	EnsemblPlants:Zm00001d037086_P006	EnsemblPlants:Zm00001d037086_T006	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

PHD-transcription factor 16Origin of replication complex subunit 1A

Coordinates

chr6:+:111753650..111762115

Molecular Weight (calculated)

100470.0 Da

IEP (calculated)

8.369

GRAVY (calculated)

-0.540

Length

885 amino acids

Sequence
(BLAST)

001: MDLVASPSRS KSKPRSSPAK PVAAPAESRM DLCTPSKPTP RRKSKTTASP APMSPATPST VRRSRRLLET PTKASPEVQV KATPISRAKR TAPSPKTPVQ
101: RETKRQRRHP RKRAYYRKVV YDGGEFEVGD DVYVKRRETA ESDAEDPEEE ECRVCFRTGG GVMVECDACL GGFHLRCVRP PLRRVPEGDW ACPYCEAERA
201: GKVVERPRPP EGKRVVRTAK EKLLSSDLWA ARIESLWREP DGTFWAKVRW YIIPEETAAG RQLHNLRREL YRTNDLADIE METILRHCSI MCPKDFRDAN
301: NGGDDVFYCE YEYDIHWHNF KRLADIDDEP ETKEDLSDEP YNAGDDYNSD TDEDSDYDEE EESTSSFSVR RNQSHESAAN SRKGRIYGLQ KIGIQKIPEH
401: ARCHQKTELE KAKATLLLAT LPKSLPCRDK EMDEISIFVK DAICNNQCLG RCLYIHGVPG TGKTMSVLAV MRRLRSEFDS GTLRPYCFIE INGLKLASPE
501: NIYKVVYEQL SGHRVGWKKA LHYLTEHFSG GTKIGKQANQ PIVLLIDELD LLMTRNQSVL YNILDWPTKP NSNLVVIGIA NTMDLPEKLL PRISSRMGIQ
601: RLCFGPYNYR QLQEIITSRL KGIDAFEEQA IEFASRKVAA MSGDARRALE ICRRAAEFAD YRVKQSRQSA QTTVSAKKGD AVVSMGDIEA AIQEVFQAPH
701: IQVMKNCPKF GKVILVAMVH ELYKSGLGEI MFDKLATTVF SWCHANRELL PGYDTLLKIC CKLGESKIIL CEEGSKHKLQ KVQLNYPSDD VTFALKESPD
801: LPWLSKYLFS LEATIHFTCR PCIHTSHGRS AKEPSKDVGM ALHPRDHAYL IAQQEHKTLR NMYVCNFVSF KLWCCLCCIE LPRVS

Best Arabidopsis Sequence Match ( AT4G14700.1 )
(BLAST)

001: MASSLSSKAK TFKSPTKTPT KMYRKSYLSP SSTSLTPPQT PETLTPLRRS SRHVSRKINL GNDPIDLPGK ESVEEINLIR KPRKRTNDIV VAEKSKKKKI
101: DPEVSFSPVS PIRSETKKTK KKKRVYYNKV EFDETEFEIG DDVYVKRTED ANPDEEEEED PEIEDCQICF KSHTNTIMIE CDDCLGGFHL NCLKPPLKEV
201: PEGDWICQFC EVKKSGQTLV VVPKPPEGKK LARTMKEKLL SSDLWAARIE KLWKEVDDGV YWIRARWYMI PEETVLGRQR HNLKRELYLT NDFADIEMEC
301: VLRHCFVKCP KEFSKASNDG DDVFLCEYEY DVHWGSFKRV AELADGDEDS DQEWNGRKEE EIDYSDEEIE FDDEESVRGV SKSKRGGANS RKGRFFGLEK
401: VGMKRIPEHV RCHKQSELEK AKATLLLATR PKSLPCRSKE MEEITAFIKG SISDDQCLGR CMYIHGVPGT GKTISVLSVM KNLKAEVEAG SVSPYCFVEI
501: NGLKLASPEN IYSVIYEGLS GHRVGWKKAL QSLNERFAEG KKIGKENEKP CILLIDELDV LVTRNQSVLY NILDWPTKPN SKLVVLGIAN TMDLPEKLLP
601: RISSRMGIQR LCFGPYNHRQ LQEIISTRLE GINAFEKTAI EFASRKVAAI SGDARRALEI CRRAAEVADY RLKKSNISAK SQLVIMADVE VAIQEMFQAP
701: HIQVMKSVSK LSRIFLTAMV HELYKTGMAE TSFDRVATTV SSICLTNGEA FPGWDILLKI GCDLGECRIV LCEPGEKHRL QKLQLNFPSD DVAFALKDNK
801: DLPWLANYL

Arabidopsis Description

ORC1AOrigin of replication complex subunit 1A [Source:UniProtKB/Swiss-Prot;Acc:Q710E8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.