Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d010341_P002 | |
| Zm00001d037086_P006 | |
| Zm00001d038134_P001 | |
| Zm00001d045080_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d013119_P001 | Maize | cytosol, nucleus, plastid | 86.79 | 87.93 |
| KXG37409 | Sorghum | cytosol | 87.82 | 87.15 |
| TraesCS2B01G265800.1 | Wheat | nucleus | 49.74 | 45.28 |
| TraesCS2D01G252100.1 | Wheat | nucleus | 48.7 | 45.19 |
| HORVU2Hr1G060120.1 | Barley | nucleus | 47.67 | 44.66 |
| Zm00001d018806_P001 | Maize | nucleus | 49.74 | 43.94 |
| Zm00001d007868_P001 | Maize | nucleus | 48.96 | 42.95 |
| GSMUA_Achr2P12990_001 | Banana | nucleus | 40.67 | 41.53 |
| GSMUA_Achr4P22960_001 | Banana | nucleus | 40.93 | 41.36 |
| GSMUA_Achr4P31520_001 | Banana | nucleus | 40.67 | 41.32 |
| GSMUA_Achr7P01160_001 | Banana | nucleus | 40.41 | 40.84 |
| GSMUA_Achr5P02530_001 | Banana | nucleus | 39.64 | 40.05 |
| AT1G30210.1 | Thale cress | nucleus | 32.12 | 38.27 |
| VIT_10s0003g03910.t01 | Wine grape | nucleus | 39.9 | 34.68 |
| AT4G18390.1 | Thale cress | nucleus | 32.64 | 34.52 |
| PGSC0003DMT400051253 | Potato | nucleus | 30.57 | 34.5 |
| TraesCS2A01G251100.1 | Wheat | plastid, vacuole | 48.19 | 33.94 |
| Zm00001d022256_P001 | Maize | nucleus | 28.24 | 33.75 |
| KRH58674 | Soybean | nucleus | 39.12 | 31.59 |
| KRH42567 | Soybean | nucleus | 37.56 | 30.98 |
| KRH11155 | Soybean | nucleus | 40.67 | 30.72 |
| Solyc08g048390.1.1 | Tomato | nucleus | 30.57 | 30.49 |
| Solyc08g048370.2.1 | Tomato | cytosol | 25.13 | 29.75 |
| CDX78849 | Canola | nucleus, plastid | 18.13 | 29.29 |
| Bra013304.1-P | Field mustard | nucleus, plastid | 18.13 | 29.29 |
| KRH21093 | Soybean | nucleus | 39.64 | 28.76 |
| Zm00001d010730_P001 | Maize | cytosol, plastid | 18.65 | 26.18 |
| Zm00001d038683_P001 | Maize | cytosol | 19.17 | 24.83 |
| Zm00001d043368_P001 | Maize | cytosol | 18.13 | 24.73 |
| Zm00001d008919_P001 | Maize | nucleus, plastid | 23.32 | 21.18 |
| Zm00001d020433_P001 | Maize | nucleus | 12.69 | 19.37 |
| Zm00001d005737_P001 | Maize | cytosol | 13.73 | 19.2 |
| Zm00001d032217_P001 | Maize | cytosol | 11.66 | 18.75 |
| Zm00001d043423_P001 | Maize | nucleus | 20.47 | 18.2 |
| Zm00001d050389_P001 | Maize | nucleus | 12.69 | 17.88 |
| Zm00001d039371_P001 | Maize | mitochondrion | 23.58 | 16.11 |
| Zm00001d033673_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 12.69 | 13.39 |
| Zm00001d013467_P001 | Maize | nucleus | 11.4 | 12.26 |
| Zm00001d012725_P002 | Maize | plastid | 20.73 | 11.46 |
Protein Annotations
| MapMan:15.5.19 | EMBL:BT067330 | UniProt:C0PGB1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR017887 | EMBL:KJ726824 | ProteinID:ONM10013.1 | PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF63 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI000195CAA5 | EnsemblPlantsGene:Zm00001d034353 | EnsemblPlants:Zm00001d034353_P001 |
| EnsemblPlants:Zm00001d034353_T001 | SEG:seg | : | : | : | : |
Description
TCP-transcription factor 5Transcription factor TCP2
Coordinates
chr1:+:290438168..290439328
Molecular Weight (calculated)
39361.5 Da
IEP (calculated)
9.880
GRAVY (calculated)
-0.428
Length
386 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAAAVGDGA PAGRSHQGAK RARGGAVKGS ETEAAAWGQP PPLPPPPGPG AGSRIYRVGA SGGKDRHSKV YTTKGIRDRR VRLSAPTAIQ FYDLQDRLGF
101: DQPSKAIEWL INAAASAIEK LPELDPAAFA ALPAPGGADA AGNDKQQQQG SKSAGSSTSE TSKGSELSLS RSDGRGGAAA QDRVVTVAST SAQAASFTEL
201: LTGVASAGAI SAGEHRQSWH QQPNVSAGAG ADRVGIAHNG KGAHGLSTAT HAFSGPAAAK FGNAPPFGLV PAQPFDFTIP IEMPHFSLGQ DTSAASSSGA
301: GDYSLSFSMS SGFLGANRGT LQSNSQSNFS GHHHQQLQRL DGPLLFGHAH AAAAMHPASE NQLTASAALQ LWDGLRHSGM KEKGRS
101: DQPSKAIEWL INAAASAIEK LPELDPAAFA ALPAPGGADA AGNDKQQQQG SKSAGSSTSE TSKGSELSLS RSDGRGGAAA QDRVVTVAST SAQAASFTEL
201: LTGVASAGAI SAGEHRQSWH QQPNVSAGAG ADRVGIAHNG KGAHGLSTAT HAFSGPAAAK FGNAPPFGLV PAQPFDFTIP IEMPHFSLGQ DTSAASSSGA
301: GDYSLSFSMS SGFLGANRGT LQSNSQSNFS GHHHQQLQRL DGPLLFGHAH AAAAMHPASE NQLTASAALQ LWDGLRHSGM KEKGRS
001: MIGDLMKNNN NGDVVDNEVN NRLSRWHHNS SRIIRVSRAS GGKDRHSKVL TSKGPRDRRV RLSVSTALQF YDLQDRLGYD QPSKAVEWLI KAAEDSISEL
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN
Arabidopsis Description
TCP2Transcription factor TCP2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V43]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.