Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G164500.1 | Wheat | nucleus | 74.12 | 70.0 |
| TraesCS3D01G146900.1 | Wheat | nucleus | 74.59 | 69.82 |
| TraesCS3A01G140100.1 | Wheat | nucleus | 73.88 | 68.71 |
| Zm00001d039371_P001 | Maize | mitochondrion | 82.35 | 61.95 |
| Os01t0213800-01 | Rice | mitochondrion | 77.18 | 56.65 |
| OQU86111 | Sorghum | plastid | 82.82 | 56.14 |
| HORVU3Hr1G028240.5 | Barley | extracellular, golgi, mitochondrion | 74.82 | 53.9 |
| GSMUA_Achr10P... | Banana | nucleus | 29.88 | 51.0 |
| GSMUA_Achr10P... | Banana | nucleus | 29.65 | 47.55 |
| VIT_19s0014g01680.t01 | Wine grape | nucleus | 43.53 | 46.48 |
| GSMUA_Achr6P14430_001 | Banana | nucleus | 25.41 | 45.0 |
| KRH26201 | Soybean | nucleus | 40.94 | 43.83 |
| PGSC0003DMT400032269 | Potato | nucleus | 40.71 | 43.25 |
| KRH55125 | Soybean | nucleus | 39.76 | 43.22 |
| Solyc07g062680.1.1 | Tomato | nucleus | 40.47 | 43.0 |
| KRH27317 | Soybean | nucleus | 37.65 | 42.44 |
| GSMUA_Achr3P03540_001 | Banana | nucleus | 39.29 | 41.54 |
| KRH22307 | Soybean | nucleus | 33.18 | 40.99 |
| Bra021586.1-P | Field mustard | nucleus | 33.65 | 40.86 |
| KRH27017 | Soybean | nucleus | 32.94 | 40.82 |
| AT1G53230.1 | Thale cress | nucleus | 36.94 | 40.15 |
| KRH21998 | Soybean | nucleus | 36.94 | 39.95 |
| AT3G15030.1 | Thale cress | nucleus | 39.06 | 39.52 |
| Solyc12g014140.1.1 | Tomato | nucleus | 36.47 | 39.34 |
| KRH25697 | Soybean | nucleus | 26.82 | 39.18 |
| Bra027284.1-P | Field mustard | nucleus | 37.41 | 39.16 |
| Bra030952.1-P | Field mustard | nucleus | 31.53 | 38.84 |
| Bra001579.1-P | Field mustard | nucleus | 36.94 | 38.57 |
| PGSC0003DMT400039786 | Potato | nucleus | 38.12 | 38.48 |
| GSMUA_Achr5P06660_001 | Banana | mitochondrion, plastid | 41.65 | 37.58 |
| VIT_12s0028g02520.t01 | Wine grape | nucleus | 27.06 | 37.46 |
| Bra018280.1-P | Field mustard | nucleus | 29.88 | 36.39 |
| Solyc07g053410.2.1 | Tomato | cytosol | 20.71 | 36.07 |
| AT2G31070.1 | Thale cress | nucleus | 30.12 | 35.46 |
| Solyc05g012840.1.1 | Tomato | nucleus | 18.35 | 34.98 |
| PGSC0003DMT400024329 | Potato | nucleus | 25.41 | 34.73 |
| KRH55819 | Soybean | nucleus | 27.06 | 34.53 |
| Solyc10g018710.1.1 | Tomato | nucleus | 13.65 | 33.92 |
| Zm00001d043423_P001 | Maize | nucleus | 30.12 | 29.49 |
| VIT_10s0003g00870.t01 | Wine grape | nucleus | 25.65 | 28.53 |
| Solyc11g045640.1.1 | Tomato | nucleus | 14.59 | 28.31 |
| Solyc05g032780.1.1 | Tomato | nucleus | 14.12 | 28.3 |
| PGSC0003DMT400059117 | Potato | nucleus | 21.88 | 27.84 |
| Solyc02g077250.2.1 | Tomato | nucleus | 21.65 | 25.99 |
| Zm00001d022256_P001 | Maize | nucleus | 18.35 | 24.15 |
| Zm00001d034353_P001 | Maize | cytosol | 21.18 | 23.32 |
| Zm00001d010730_P001 | Maize | cytosol, plastid | 15.06 | 23.27 |
| Zm00001d013119_P001 | Maize | cytosol, nucleus, plastid | 20.47 | 22.83 |
| Zm00001d038683_P001 | Maize | cytosol | 14.82 | 21.14 |
| Zm00001d018806_P001 | Maize | nucleus | 20.94 | 20.37 |
| Zm00001d043368_P001 | Maize | cytosol | 13.41 | 20.14 |
| Zm00001d007868_P001 | Maize | nucleus | 20.24 | 19.55 |
| Zm00001d012725_P002 | Maize | plastid | 29.88 | 18.19 |
| Zm00001d020433_P001 | Maize | nucleus | 10.35 | 17.39 |
| Zm00001d005737_P001 | Maize | cytosol | 10.82 | 16.67 |
| PGSC0003DMT400068478 | Potato | nucleus | 20.0 | 16.31 |
| Zm00001d032217_P001 | Maize | cytosol | 9.18 | 16.25 |
| Solyc10g008780.1.1 | Tomato | nucleus | 20.71 | 15.12 |
| Zm00001d050389_P001 | Maize | nucleus | 9.65 | 14.96 |
| Zm00001d033673_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 12.0 | 13.93 |
| Zm00001d013467_P001 | Maize | nucleus | 11.29 | 13.37 |
Protein Annotations
| EntrezGene:103634970 | MapMan:15.5.19 | ProteinID:AQK91013.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR017887 | UniProt:K7VR25 | PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF66 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI000182EF32 | EnsemblPlantsGene:Zm00001d008919 | EnsemblPlants:Zm00001d008919_P001 |
| EnsemblPlants:Zm00001d008919_T001 | SEG:seg | : | : | : | : |
Description
TCP-transcription factor 24Transcription factor TCP4
Coordinates
chr8:-:25254637..25255914
Molecular Weight (calculated)
44094.2 Da
IEP (calculated)
7.168
GRAVY (calculated)
-0.638
Length
425 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDASQSHSH SHSQHHGFQP QLLSFGGAGQ HHAHQFTAQA ASHLRPRGRG AVGAGGEAVA TTSASRSRVR GGGGEAVAVQ GGHIARSTGR KDSHSKVCTA
101: RGTRDRRVRL AAHTAIQFYD VQDRLGYDRP SKAVDWLIKN AKDAIDRLET TLPAANAAPP SSSWTHPDSA ENSDDQAQAI TVAHTAFDFP GADGFLVPAS
201: LDSDTIKSFF PVAGTGGGEA EASSSATAAQ SSAMGYQSYT PDLLSRTGGH SQELRLSLQS LPDPMFHHRS HGHGHGGDGS AQQALFPGAA SYSFGGGAAW
301: AEHAQSQRVA PWNAPDPGGG STGGYLLNVS QSQQAALGGQ SQFFFQRGPL QSSNQPSDSE RGWPETVEAD NPMQHGGPTI GFAPGTSFSG IRIPTRIQGG
401: EEHNGGSGNG DKPPPPPSVS SASRQ
101: RGTRDRRVRL AAHTAIQFYD VQDRLGYDRP SKAVDWLIKN AKDAIDRLET TLPAANAAPP SSSWTHPDSA ENSDDQAQAI TVAHTAFDFP GADGFLVPAS
201: LDSDTIKSFF PVAGTGGGEA EASSSATAAQ SSAMGYQSYT PDLLSRTGGH SQELRLSLQS LPDPMFHHRS HGHGHGGDGS AQQALFPGAA SYSFGGGAAW
301: AEHAQSQRVA PWNAPDPGGG STGGYLLNVS QSQQAALGGQ SQFFFQRGPL QSSNQPSDSE RGWPETVEAD NPMQHGGPTI GFAPGTSFSG IRIPTRIQGG
401: EEHNGGSGNG DKPPPPPSVS SASRQ
001: MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH
Arabidopsis Description
TCP4TCP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD44]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.