Factsheet for PGSC0003DMT400032269

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g062680.1.1	Tomato	nucleus	95.75	95.75
PGSC0003DMT400039786	Potato	nucleus	58.5	55.58
TraesCS3B01G164500.1	Wheat	nucleus	48.25	42.89
TraesCS3A01G140100.1	Wheat	nucleus	48.75	42.67
TraesCS3D01G146900.1	Wheat	nucleus	48.25	42.51
Zm00001d008919_P001	Maize	nucleus, plastid	43.25	40.71
PGSC0003DMT400024329	Potato	nucleus	31.25	40.19
Os01t0213800-01	Rice	mitochondrion	48.75	33.68
Zm00001d039371_P001	Maize	mitochondrion	46.75	33.1
HORVU3Hr1G028240.5	Barley	extracellular, golgi, mitochondrion	48.75	33.05
Os01t0755500-01	Rice	cytosol, mitochondrion	35.25	31.61
Zm00001d043423_P001	Maize	nucleus	34.25	31.57
KXG33398	Sorghum	nucleus	35.5	31.49
PGSC0003DMT400059117	Potato	nucleus	25.75	30.84
OQU86111	Sorghum	plastid	46.75	29.82
HORVU0Hr1G006890.2	Barley	cytosol	13.5	25.12
PGSC0003DMT400068332	Potato	cytosol, nucleus, peroxisome, plastid	13.5	24.77
PGSC0003DMT400051253	Potato	nucleus	20.75	24.27
PGSC0003DMT400003453	Potato	nucleus, plastid	15.25	21.55
PGSC0003DMT400010453	Potato	nucleus, plastid	15.75	20.66
PGSC0003DMT400008673	Potato	nucleus	8.0	20.38
PGSC0003DMT400063327	Potato	nucleus, plastid	16.75	19.48
Zm00001d012725_P002	Maize	plastid	33.5	19.2
PGSC0003DMT400026037	Potato	cytosol, nucleus, plastid	11.25	18.91
PGSC0003DMT400068478	Potato	nucleus	24.25	18.62
PGSC0003DMT400010380	Potato	nucleus	12.5	17.92
PGSC0003DMT400019324	Potato	nucleus	16.25	17.06
PGSC0003DMT400002153	Potato	nucleus	13.5	15.25
PGSC0003DMT400014572	Potato	nucleus	14.0	14.81

Protein Annotations

EntrezGene:102601150	MapMan:15.5.19	ProteinID:ADN51992	ProteinID:ADN51992.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EMBL:HM210877	InterPro:IPR017887	UniProt:M1AX46	PFAM:PF03634
EnsemblPlantsGene:PGSC0003DMG400012396	PGSC:PGSC0003DMG400012396	EnsemblPlants:PGSC0003DMT400032269	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF66
InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000295F248	RefSeq:XP_006348284.1	SEG:seg	:

Description

Lanceolate [Source:PGSC_GENE;Acc:PGSC0003DMG400012396]

Coordinates

chr7:+:52824894..52827592

Molecular Weight (calculated)

43558.2 Da

IEP (calculated)

6.661

GRAVY (calculated)

-0.680

Length

400 amino acids

Sequence
(BLAST)

001: MGETSRLGIR NTVGEIVEVQ GGHIVRSTGR KDRHSKVCTA KGPRDRRVRL SAHTAIQFYD VQDRLGYDRP SKAVDWLIKK AKPAIDELAE LPAWKPTIGS
101: VSAAAATNTN IEQEQAQKQQ EDNNFAFQQG NVSLFDNVAG PSSKRAMESN TASFLPPSLE SDAIADTIKS FFPMGSSTSG NSSAMQFHSF QEPHMLSRTN
201: SQNQDLSLSL QFQDPILLHH QNQQAQHHNQ TNHREQEQVQ VQAPAHFTGN TPLGFDTSGW SMHQRLGSWS DSRDTGPGGS GGAVTGPGGY LFNSPPAPAL
301: LQQLFGQNQF FSQRGPLQSS NTSSVRAWMD PSTIAIASGD PSHHHQAVLP MYPSTIPGYG FASEVGEFSG FRIPARIQGE EEEHDGISDK PSSASSDSRH

Best Arabidopsis Sequence Match ( AT3G15030.2 )
(BLAST)

001: MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH

Arabidopsis Description

TCP4TCP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.