Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g089830.1.1 | Tomato | cytosol, nucleus, plastid | 90.34 | 89.21 |
| PGSC0003DMT400008673 | Potato | nucleus | 28.57 | 43.31 |
| VIT_14s0083g00150.t01 | Wine grape | nucleus | 31.51 | 22.73 |
| PGSC0003DMT400010380 | Potato | nucleus | 25.63 | 21.86 |
| KRH01497 | Soybean | plastid | 33.61 | 21.62 |
| KRH45185 | Soybean | plastid | 33.19 | 21.35 |
| KRH35497 | Soybean | nucleus | 33.19 | 20.79 |
| KRG93829 | Soybean | nucleus, plastid | 36.13 | 20.67 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 28.15 | 20.3 |
| KRH18263 | Soybean | plastid | 35.71 | 20.29 |
| KRG91334 | Soybean | nucleus | 31.93 | 20.27 |
| TraesCS5D01G002300.1 | Wheat | nucleus | 22.27 | 20.08 |
| TraesCS5A01G001900.1 | Wheat | nucleus | 22.69 | 19.78 |
| CDY12633 | Canola | nucleus | 26.05 | 19.25 |
| PGSC0003DMT400019324 | Potato | nucleus | 30.67 | 19.16 |
| CDY01793 | Canola | nucleus | 28.15 | 18.98 |
| TraesCS5B01G002300.1 | Wheat | nucleus | 23.11 | 18.64 |
| Bra004212.1-P | Field mustard | nucleus | 26.47 | 18.48 |
| CDY07432 | Canola | nucleus | 27.31 | 18.47 |
| TraesCS4A01G271300.1 | Wheat | nucleus | 27.31 | 18.47 |
| TraesCS4D01G040100.1 | Wheat | nucleus | 27.31 | 18.47 |
| AT1G67260.1 | Thale cress | nucleus | 27.73 | 18.38 |
| TraesCS4B01G042700.1 | Wheat | nucleus | 27.31 | 18.36 |
| PGSC0003DMT400068332 | Potato | cytosol, nucleus, peroxisome, plastid | 16.81 | 18.35 |
| PGSC0003DMT400014572 | Potato | nucleus | 28.99 | 18.25 |
| CDX96104 | Canola | nucleus | 26.89 | 18.23 |
| HORVU4Hr1G007040.1 | Barley | nucleus | 27.31 | 18.21 |
| CDY46042 | Canola | nucleus | 26.05 | 17.92 |
| Bra034010.1-P | Field mustard | nucleus | 26.05 | 17.92 |
| Bra004097.1-P | Field mustard | nucleus | 26.05 | 17.87 |
| HORVU5Hr1G000490.1 | Barley | nucleus | 22.27 | 17.85 |
| CDY28898 | Canola | nucleus | 26.47 | 17.8 |
| PGSC0003DMT400002153 | Potato | nucleus | 25.63 | 17.23 |
| EER93595 | Sorghum | cytosol, nucleus, peroxisome, plastid | 27.31 | 17.11 |
| Os03t0706500-01 | Rice | nucleus | 27.73 | 17.01 |
| Zm00001d033673_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 26.05 | 16.94 |
| Zm00001d013467_P001 | Maize | nucleus | 24.79 | 16.43 |
| PGSC0003DMT400051253 | Potato | nucleus | 19.75 | 13.74 |
| PGSC0003DMT400003453 | Potato | nucleus, plastid | 14.71 | 12.37 |
| PGSC0003DMT400059117 | Potato | nucleus | 17.23 | 12.28 |
| PGSC0003DMT400010453 | Potato | nucleus, plastid | 15.55 | 12.13 |
| PGSC0003DMT400024329 | Potato | nucleus | 15.55 | 11.9 |
| PGSC0003DMT400032269 | Potato | nucleus | 18.91 | 11.25 |
| PGSC0003DMT400063327 | Potato | nucleus, plastid | 14.29 | 9.88 |
| PGSC0003DMT400039786 | Potato | nucleus | 17.23 | 9.74 |
| PGSC0003DMT400068478 | Potato | nucleus | 16.39 | 7.49 |
Protein Annotations
| EntrezGene:102582906 | MapMan:15.5.19 | InterPro:CYC/TB1_R_domain | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR017887 | InterPro:IPR017888 | UniProt:M1AMI9 | PFAM:PF03634 | EnsemblPlantsGene:PGSC0003DMG400010045 |
| PGSC:PGSC0003DMG400010045 | EnsemblPlants:PGSC0003DMT400026037 | PFscan:PS51369 | PFscan:PS51370 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF18 |
| InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI000295C938 | RefSeq:XP_006338278.1 | SEG:seg | : |
Description
TCP protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010045]
Coordinates
chr2:+:44893888..44894880
Molecular Weight (calculated)
26995.9 Da
IEP (calculated)
9.895
GRAVY (calculated)
-0.719
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MFPFGNSSNG NPILHSSFLS NQILLHQHDL PTHHHYLGAP NGHLIDSYAT NNLVINKSKK PVKKDRHSKI LTSQGHRDRR VRLSLGVARK FFDLQDMLGY
101: DKPSKTLDWL FTKSKLAIED LINDVSKKSI LDTPSSINNN NNSECDEDMI VPLAAVDELT KKAKQERDSR AKARARARER TIKKIWTQIA PNREATASHY
201: NNWNHDNVNP TIMDASTICC TSSLQVQKAW DSYHGSQI
101: DKPSKTLDWL FTKSKLAIED LINDVSKKSI LDTPSSINNN NNSECDEDMI VPLAAVDELT KKAKQERDSR AKARARARER TIKKIWTQIA PNREATASHY
201: NNWNHDNVNP TIMDASTICC TSSLQVQKAW DSYHGSQI
001: MSSSTNDYND GNNNGVYPLS LYLSSLSGHQ DIIHNPYNHQ LKASPGHMVS AVPESLIDYM AFKSNNVVNQ QGFEFPEVSK EIKKVVKKDR HSKIQTAQGI
101: RDRRVRLSIG IARQFFDLQD MLGFDKASKT LDWLLKKSRK AIKEVVQAKN LNNDDEDFGN IGGDVEQEEE KEEDDNGDKS FVYGLSPGYG EEEVVCEATK
201: AGIRKKKSEL RNISSKGLGA KARGKAKERT KEMMAYDNPE TASDITQSEI MDPFKRSIVF NEGEDMTHLF YKEPIEEFDN QESILTNMTL PTKMGQSYNQ
301: NNGILMLVDQ SSSSNYNTFL PQNLDYSYDQ NPFHDQTLYV VTDKNFPKGF L
101: RDRRVRLSIG IARQFFDLQD MLGFDKASKT LDWLLKKSRK AIKEVVQAKN LNNDDEDFGN IGGDVEQEEE KEEDDNGDKS FVYGLSPGYG EEEVVCEATK
201: AGIRKKKSEL RNISSKGLGA KARGKAKERT KEMMAYDNPE TASDITQSEI MDPFKRSIVF NEGEDMTHLF YKEPIEEFDN QESILTNMTL PTKMGQSYNQ
301: NNGILMLVDQ SSSSNYNTFL PQNLDYSYDQ NPFHDQTLYV VTDKNFPKGF L
Arabidopsis Description
TCP1Transcription factor TCP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYG7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.