CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07432	Canola	nucleus	94.35	94.89
CDY12633	Canola	nucleus	69.21	76.09
CDY01793	Canola	nucleus	75.42	75.64
CDX96104	Canola	nucleus	74.86	75.5
CDY46042	Canola	nucleus	72.88	74.57
AT1G67260.1	Thale cress	nucleus	71.19	70.19
PGSC0003DMT400008673	Potato	nucleus	12.99	29.3
Solyc03g045030.1.1	Tomato	nucleus	13.84	26.78
PGSC0003DMT400026037	Potato	cytosol, nucleus, plastid	17.8	26.47
Solyc02g089830.1.1	Tomato	cytosol, nucleus, plastid	17.8	26.14
VIT_14s0083g00150.t01	Wine grape	nucleus	23.45	25.15
KRH01497	Soybean	plastid	23.16	22.16
KRH45185	Soybean	plastid	23.16	22.16
CDY45852	Canola	nucleus	19.21	20.48
CDX81550	Canola	nucleus	18.93	19.82
KRG91334	Soybean	nucleus	20.9	19.73
TraesCS5D01G002300.1	Wheat	nucleus	14.69	19.7
CDY33597	Canola	nucleus	17.8	19.5
TraesCS5A01G001900.1	Wheat	nucleus	14.69	19.05
KRH18263	Soybean	plastid	22.32	18.85
KRG93829	Soybean	nucleus, plastid	22.03	18.75
CDY18525	Canola	nucleus	14.69	18.37
KRH35497	Soybean	nucleus	19.49	18.16
CDX95517	Canola	nucleus	14.41	18.02
CDX99891	Canola	nucleus	16.1	17.98
TraesCS5B01G002300.1	Wheat	nucleus	14.97	17.97
HORVU4Hr1G007040.1	Barley	nucleus	18.08	17.93
TraesCS4D01G040100.1	Wheat	nucleus	17.51	17.61
CDY26285	Canola	nucleus	15.82	17.61
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	16.38	17.58
TraesCS4B01G042700.1	Wheat	nucleus	17.51	17.51
TraesCS4A01G271300.1	Wheat	nucleus	17.23	17.33
CDY60877	Canola	nucleus	17.51	17.32
HORVU5Hr1G000490.1	Barley	nucleus	14.41	17.17
CDY01537	Canola	nucleus	14.12	16.29
Os03t0706500-01	Rice	nucleus	17.8	16.24
Zm00001d033673_P001	Maize	cytosol, nucleus, peroxisome, plastid	16.67	16.12
EER93595	Sorghum	cytosol, nucleus, peroxisome, plastid	17.23	16.05
CDY59229	Canola	nucleus	14.12	15.97
CDX90234	Canola	nucleus	13.84	15.91
Zm00001d013467_P001	Maize	nucleus	16.1	15.88
CDX81083	Canola	nucleus, plastid	10.73	15.57
CDX78321	Canola	nucleus, plastid	10.73	15.45
CDY55633	Canola	nucleus	16.67	15.45
CDY02519	Canola	nucleus	14.97	15.41
CDX74272	Canola	nucleus	13.56	15.0
CDX91977	Canola	nucleus	13.56	15.0
CDY20097	Canola	nucleus	14.97	14.85
CDY10772	Canola	nucleus	13.84	14.16
CDY10771	Canola	nucleus	13.84	14.12
CDY24724	Canola	nucleus	13.84	14.08
CDY68596	Canola	cytosol, nucleus	15.25	13.99
CDY47005	Canola	nucleus, plastid	11.86	13.95
CDX75802	Canola	nucleus	15.82	13.86
CDX82453	Canola	nucleus	15.82	13.83
CDY68618	Canola	nucleus, plastid	11.58	13.58
CDY62798	Canola	nucleus	15.54	13.38
CDX82339	Canola	nucleus	15.82	13.21
CDY52898	Canola	nucleus	15.54	12.94
CDY58696	Canola	nucleus	12.71	12.36
CDY02180	Canola	nucleus	12.71	12.3
CDY60475	Canola	endoplasmic reticulum, golgi	13.56	12.09
CDY43255	Canola	endoplasmic reticulum, golgi	14.12	11.65
CDX78849	Canola	nucleus, plastid	6.21	9.21
CDX97627	Canola	mitochondrion	4.24	5.47

Protein Annotations

MapMan:15.5.19	UniProt:A0A078GW88	EnsemblPlants:CDY28898	ProteinID:CDY28898	ProteinID:CDY28898.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00041590001	InterPro:IPR017887	PFAM:PF03634	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF18	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0004EDD657	SEG:seg

Description

BnaC06g26860DBnaC06g26860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GW88]

Coordinates

chrLK032227:+:508236..510650

Molecular Weight (calculated)

40204.1 Da

IEP (calculated)

5.864

GRAVY (calculated)

-0.777

Length

354 amino acids

Sequence
(BLAST)

001: MSSSNNGYNN GSNNGVFPLS LYLSSLSGHQ DIICNPYNHQ LTASPGQMVS AVPESLMDYM AFNSNNVMNQ QGFEIPEVSR EMKKAVKKDR HSKIHTAQGL
101: RERRVRLSIG ISRQFFDLQD MLGFDKASKT LDWLLKKSRR AIKELVQEKK LNNNVEDFGN EGGNVVHEED DYDYDDDNVG DNNFVYGLSP YSFEEEVLCE
201: VKKAEKRKKK TEMSNTSSKG SRAKAKGKAK GLTRDMINDH PETASEIIQT EIMDPFKRSI IFNEGEEMTH SFYKESIQES DNHECITKTK VNLPMNMDQG
301: YNQHYGALML KDQGSSSNYN AILPQNLDCD YNPNPFIDQL FCGVTNTNFF RGIV

Best Arabidopsis Sequence Match ( AT1G67260.1 )
(BLAST)

001: MSSSTNDYND GNNNGVYPLS LYLSSLSGHQ DIIHNPYNHQ LKASPGHMVS AVPESLIDYM AFKSNNVVNQ QGFEFPEVSK EIKKVVKKDR HSKIQTAQGI
101: RDRRVRLSIG IARQFFDLQD MLGFDKASKT LDWLLKKSRK AIKEVVQAKN LNNDDEDFGN IGGDVEQEEE KEEDDNGDKS FVYGLSPGYG EEEVVCEATK
201: AGIRKKKSEL RNISSKGLGA KARGKAKERT KEMMAYDNPE TASDITQSEI MDPFKRSIVF NEGEDMTHLF YKEPIEEFDN QESILTNMTL PTKMGQSYNQ
301: NNGILMLVDQ SSSSNYNTFL PQNLDYSYDQ NPFHDQTLYV VTDKNFPKGK VWIQDSFVN

Arabidopsis Description

TCP1Transcription factor TCP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYG7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.