CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45185	Soybean	plastid	94.05	94.05
KRH18263	Soybean	plastid	65.68	58.0
KRG93829	Soybean	nucleus, plastid	64.59	57.45
KRG91334	Soybean	nucleus	45.68	45.07
KRH35497	Soybean	nucleus	45.41	44.21
VIT_14s0083g00150.t01	Wine grape	nucleus	35.95	40.3
PGSC0003DMT400026037	Potato	cytosol, nucleus, plastid	21.62	33.61
Solyc02g089830.1.1	Tomato	cytosol, nucleus, plastid	21.08	32.37
PGSC0003DMT400008673	Potato	nucleus	13.51	31.85
Solyc03g045030.1.1	Tomato	nucleus	14.59	29.51
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	24.59	27.58
KRH56692	Soybean	nucleus	24.59	24.2
KRH03810	Soybean	nucleus	24.59	23.95
TraesCS5D01G002300.1	Wheat	nucleus	17.03	23.86
CDX96104	Canola	nucleus	22.43	23.65
CDY07432	Canola	nucleus	22.43	23.58
CDY01793	Canola	nucleus	22.43	23.51
Bra004212.1-P	Field mustard	nucleus	21.62	23.46
Bra004097.1-P	Field mustard	nucleus	21.89	23.34
CDY28898	Canola	nucleus	22.16	23.16
TraesCS5A01G001900.1	Wheat	nucleus	17.03	23.08
CDY12633	Canola	nucleus	19.73	22.67
AT1G67260.1	Thale cress	nucleus	21.89	22.56
KRH54810	Soybean	nucleus	24.05	22.47
HORVU4Hr1G007040.1	Barley	nucleus	21.62	22.41
TraesCS4D01G040100.1	Wheat	nucleus	21.08	22.16
KRH63057	Soybean	nucleus	22.97	22.08
TraesCS5B01G002300.1	Wheat	nucleus	17.57	22.03
Bra034010.1-P	Field mustard	nucleus	20.54	21.97
TraesCS4A01G271300.1	Wheat	nucleus	20.81	21.88
TraesCS4B01G042700.1	Wheat	nucleus	20.81	21.75
CDY46042	Canola	nucleus	20.27	21.68
HORVU5Hr1G000490.1	Barley	nucleus	17.3	21.55
Zm00001d033673_P001	Maize	cytosol, nucleus, peroxisome, plastid	19.46	19.67
EER93595	Sorghum	cytosol, nucleus, peroxisome, plastid	19.46	18.95
Os03t0706500-01	Rice	nucleus	19.46	18.56
Zm00001d013467_P001	Maize	nucleus	17.84	18.38
KRH63215	Soybean	nucleus, plastid	15.14	14.47
KRH54711	Soybean	plastid	15.14	14.36
KRH27017	Soybean	nucleus	13.24	14.29
KRH45058	Soybean	nucleus	13.51	14.08
KRH22307	Soybean	nucleus	12.97	13.95
KRG93654	Soybean	nucleus	14.05	13.9
KRH01308	Soybean	cytosol	14.05	13.54
KRH25697	Soybean	nucleus	10.27	13.06
KRH58674	Soybean	nucleus	16.76	12.97
KRH26201	Soybean	nucleus	13.78	12.85
KRH27317	Soybean	nucleus	12.97	12.73
KRH42567	Soybean	nucleus	15.95	12.61
KRH55125	Soybean	nucleus	13.24	12.53
KRH11155	Soybean	nucleus	17.03	12.33
KRH21998	Soybean	nucleus	12.97	12.21
KRH21093	Soybean	nucleus	17.03	11.84
KRH56798	Soybean	nucleus	12.43	11.76
KRH55819	Soybean	nucleus	10.54	11.71
KRH03150	Soybean	nucleus, plastid	12.16	11.57

Protein Annotations

EntrezGene:100786452	MapMan:15.5.19	EMBL:ACUP02011516	InterPro:CYC/TB1_R_domain	EnsemblPlantsGene:GLYMA_18G280700	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	InterPro:IPR017888	UniProt:K7MV75	EnsemblPlants:KRH01497
ProteinID:KRH01497	ProteinID:KRH01497.1	PFAM:PF03634	PFscan:PS51369	PFscan:PS51370	PANTHER:PTHR31072
PANTHER:PTHR31072:SF18	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000233F3F0	SEG:seg	:

Description

hypothetical protein

Coordinates

chr18:-:56158545..56161978

Molecular Weight (calculated)

41286.6 Da

IEP (calculated)

9.578

GRAVY (calculated)

-0.709

Length

370 amino acids

Sequence
(BLAST)

001: MFPSTNYTSS GSYPRFPSSS SSTSPYPSFT LLHPENSSSS NNTFLHDPLA LTYIPSHYHA PIPETLANWA VADCAILNQD LGGALYGITK KPMKKATKKD
101: RHSKIHTSQG LRDRRVRLSI EIARKFFDLQ DMLGFDKASN TLDWLFTKSK KAIKELTRSK HSVESFEFSS SSEGEVVSTI QQQDLQQQHG INLENGKLKE
201: PAAYCVKAKM KESREKARAR AREKTSSKVL CNTSGEGKVQ ELKKKCPATE NPQILNQLRS TLQPPHPQNV GGEVPRDDDF NVIEESIVIR RKLKHTLMSS
301: NIHHQNAVIP KEASVNNSDY HSFPNLSPNW EANNGANGRS TFCAIASMNL STGLQIFGKS WEECTNPHPS

Best Arabidopsis Sequence Match ( AT1G67260.3 )
(BLAST)

001: MSSSTNDYND GNNNGVYPLS LYLSSLSGHQ DIIHNPYNHQ LKASPGHMVS AVPESLIDYM AFKSNNVVNQ QGFEFPEVSK EIKKVVKKDR HSKIQTAQGI
101: RDRRVRLSIG IARQFFDLQD MLGFDKASKT LDWLLKKSRK AIKEVVQAKN LNNDDEDFGN IGGDVEQEEE KEEDDNGDKS FVYGLSPGYG EEEVVCEATK
201: AGIRKKKSEL RNISSKGLGA KARGKAKERT KEMMAYDNPE TASDITQSEI MDPFKRSIVF NEGEDMTHLF YKEPIEEFDN QESILTNMTL PTKMGQSYNQ
301: NNGILMLVDQ SSSSNYNTFL PQNLDYSYDQ NPFHDQTLYV VTDKNFPKGF L

Arabidopsis Description

TCP1Transcription factor TCP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYG7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.