Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G31070.1 | KRG88736 | AT2G22840.1 | 21245844 |
| AT2G31070.1 | KRG88739 | AT2G22840.1 | 21245844 |
| AT2G31070.1 | KRH05542 | AT2G22840.1 | 21245844 |
| AT2G31070.1 | KRH05543 | AT2G22840.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH27017 | Soybean | nucleus | 93.6 | 93.88 |
| KRH25697 | Soybean | nucleus | 55.81 | 65.98 |
| KRH55819 | Soybean | nucleus | 61.92 | 63.96 |
| Solyc07g053410.2.1 | Tomato | cytosol | 32.27 | 45.49 |
| PGSC0003DMT400024329 | Potato | nucleus | 40.99 | 45.34 |
| KRH27317 | Soybean | nucleus | 46.8 | 42.71 |
| CDY10772 | Canola | nucleus | 42.44 | 42.2 |
| Bra018280.1-P | Field mustard | nucleus | 42.73 | 42.12 |
| CDY10771 | Canola | nucleus | 42.15 | 41.79 |
| CDY24724 | Canola | nucleus | 42.15 | 41.67 |
| AT2G31070.1 | Thale cress | nucleus | 43.6 | 41.55 |
| KRH26201 | Soybean | nucleus | 47.67 | 41.31 |
| KRH55125 | Soybean | nucleus | 46.51 | 40.92 |
| KRH21998 | Soybean | nucleus | 45.93 | 40.2 |
| TraesCS3B01G164500.1 | Wheat | nucleus | 44.48 | 34.0 |
| TraesCS3D01G146900.1 | Wheat | nucleus | 44.48 | 33.7 |
| TraesCS3A01G140100.1 | Wheat | nucleus | 44.19 | 33.26 |
| Zm00001d008919_P001 | Maize | nucleus, plastid | 40.99 | 33.18 |
| Zm00001d039371_P001 | Maize | mitochondrion | 44.77 | 27.26 |
| Os01t0213800-01 | Rice | mitochondrion | 45.06 | 26.77 |
| KXG33398 | Sorghum | nucleus | 34.01 | 25.94 |
| HORVU3Hr1G028240.5 | Barley | extracellular, golgi, mitochondrion | 44.19 | 25.76 |
| Zm00001d043423_P001 | Maize | nucleus | 32.27 | 25.58 |
| Os01t0755500-01 | Rice | cytosol, mitochondrion | 32.56 | 25.11 |
| OQU86111 | Sorghum | plastid | 45.35 | 24.88 |
| KRH45058 | Soybean | nucleus | 20.06 | 19.44 |
| KRH42567 | Soybean | nucleus | 25.29 | 18.59 |
| KRH01308 | Soybean | cytosol | 20.35 | 18.23 |
| KRH58674 | Soybean | nucleus | 25.29 | 18.2 |
| KRH63215 | Soybean | nucleus, plastid | 20.35 | 18.09 |
| KRH54711 | Soybean | plastid | 20.35 | 17.95 |
| KRG93654 | Soybean | nucleus | 19.48 | 17.91 |
| KRH56798 | Soybean | nucleus | 20.35 | 17.9 |
| HORVU0Hr1G006890.2 | Barley | cytosol | 11.05 | 17.67 |
| KRH11155 | Soybean | nucleus | 26.16 | 17.61 |
| KRH21093 | Soybean | nucleus | 27.03 | 17.48 |
| KRH03150 | Soybean | nucleus, plastid | 19.77 | 17.48 |
| KRH56692 | Soybean | nucleus | 17.44 | 15.96 |
| Zm00001d012725_P002 | Maize | plastid | 31.69 | 15.62 |
| KRH03810 | Soybean | nucleus | 16.86 | 15.26 |
| KRH54810 | Soybean | nucleus | 16.28 | 14.14 |
| KRH63057 | Soybean | nucleus | 15.7 | 14.03 |
| KRH01497 | Soybean | plastid | 13.95 | 12.97 |
| KRH45185 | Soybean | plastid | 13.95 | 12.97 |
| KRG93829 | Soybean | nucleus, plastid | 14.53 | 12.02 |
| KRG91334 | Soybean | nucleus | 13.08 | 12.0 |
| KRH18263 | Soybean | plastid | 14.53 | 11.93 |
| KRH35497 | Soybean | nucleus | 12.79 | 11.58 |
Protein Annotations
| EntrezGene:100814907 | MapMan:15.5.19 | EMBL:ACUP02008404 | EnsemblPlantsGene:GLYMA_13G292500 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR017887 | UniProt:K7M2K4 | EnsemblPlants:KRH22307 | ProteinID:KRH22307 | ProteinID:KRH22307.1 |
| ProteinID:KRH22308.1 | ProteinID:KRH22309.1 | PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF13 |
| InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI000233BC35 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr13:+:39246473..39249825
Molecular Weight (calculated)
37377.8 Da
IEP (calculated)
6.765
GRAVY (calculated)
-0.730
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MGMKSTGGEI VQVQGGHIVR STGRKDRHSK VYTAKGPRDR RVRLSAHTAI QFYDVQDRLG YDRPSKAVDW LIKKAKNAID KLAELPPWHP NPNTTAADAE
101: NNNNNNAGSS DMAIAEQSES SGYNFQLQRQ LGEDHDNHHH SAFIPSPIDT DAIAFFPTTT ATSSINFQTY PPDIISRTNN STEDLGLSLH SFQDPGLIHH
201: GQSQAGANQT PSNDQTLFSG STQVGFEANY PRIVTWNSDA STDMNRTGFM VNSPSALLGQ GGSAAYSQRG TLQSSFSPSL RPWSDIPMAS SEHHHKSQQA
301: SIFGSRFLSD ALPGFCIPAR IQGEDEGHGV GNDRPSSASP NSHH
101: NNNNNNAGSS DMAIAEQSES SGYNFQLQRQ LGEDHDNHHH SAFIPSPIDT DAIAFFPTTT ATSSINFQTY PPDIISRTNN STEDLGLSLH SFQDPGLIHH
201: GQSQAGANQT PSNDQTLFSG STQVGFEANY PRIVTWNSDA STDMNRTGFM VNSPSALLGQ GGSAAYSQRG TLQSSFSPSL RPWSDIPMAS SEHHHKSQQA
301: SIFGSRFLSD ALPGFCIPAR IQGEDEGHGV GNDRPSSASP NSHH
001: MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH
Arabidopsis Description
TCP4TCP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD44]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.