Factsheet for Bra018280.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
peroxisome 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	peroxisome
PTS1:	peroxisome
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000575.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31070.1	Bra000575.1-P	AT2G22840.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10772	Canola	nucleus	97.71	98.55
CDY10771	Canola	nucleus	97.71	98.27
CDY24724	Canola	nucleus	97.71	97.99
AT2G31070.1	Thale cress	nucleus	85.39	82.55
KRH22307	Soybean	nucleus	42.12	42.73
KRH27017	Soybean	nucleus	41.55	42.27
Solyc07g053410.2.1	Tomato	cytosol	28.65	40.98
KRH25697	Soybean	nucleus	33.24	39.86
PGSC0003DMT400024329	Potato	nucleus	34.67	38.91
Bra030952.1-P	Field mustard	nucleus	35.24	35.65
KRH55819	Soybean	nucleus	33.81	35.44
Bra021586.1-P	Field mustard	nucleus	33.52	33.43
Bra001579.1-P	Field mustard	nucleus	37.82	32.43
Bra027284.1-P	Field mustard	nucleus	36.1	31.03
Zm00001d008919_P001	Maize	nucleus, plastid	36.39	29.88
TraesCS3B01G164500.1	Wheat	nucleus	36.96	28.67
TraesCS3D01G146900.1	Wheat	nucleus	36.96	28.41
TraesCS3A01G140100.1	Wheat	nucleus	36.96	28.23
Zm00001d039371_P001	Maize	mitochondrion	37.82	23.36
Os01t0213800-01	Rice	mitochondrion	38.68	23.32
Os01t0755500-01	Rice	cytosol, mitochondrion	28.37	22.2
KXG33398	Sorghum	nucleus	28.65	22.17
HORVU3Hr1G028240.5	Barley	extracellular, golgi, mitochondrion	37.25	22.03
Zm00001d043423_P001	Maize	nucleus	26.93	21.66
OQU86111	Sorghum	plastid	38.68	21.53
Bra010789.1-P	Field mustard	nucleus	18.91	21.43
Bra012600.1-P	Field mustard	nucleus	22.35	20.42
Bra032365.1-P	Field mustard	nucleus	18.34	20.13
Bra005967.1-P	Field mustard	nucleus, plastid	13.47	19.11
Bra039158.1-P	Field mustard	nucleus	16.05	18.12
Bra029344.1-P	Field mustard	nucleus, plastid	13.18	15.28
Bra012990.1-P	Field mustard	nucleus	15.19	14.48
HORVU0Hr1G006890.2	Barley	cytosol	8.88	14.42
Bra004097.1-P	Field mustard	nucleus	14.04	14.12
Bra004212.1-P	Field mustard	nucleus	13.75	14.08
Zm00001d012725_P002	Maize	plastid	28.08	14.04
Bra034010.1-P	Field mustard	nucleus	13.75	13.87
Bra037579.1-P	Field mustard	nucleus	10.89	13.33
Bra001032.1-P	Field mustard	nucleus	18.62	12.08
Bra038350.1-P	Field mustard	nucleus	11.46	11.94
Bra013304.1-P	Field mustard	nucleus, plastid	8.02	11.72
Bra001710.1-P	Field mustard	nucleus	10.89	8.94

Protein Annotations

MapMan:15.5.19	EnsemblPlantsGene:Bra018280	EnsemblPlants:Bra018280.1	EnsemblPlants:Bra018280.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009653	GO:GO:0009965	GO:GO:0009987	GO:GO:0030154	GO:GO:0045962
GO:GO:0048366	InterPro:IPR017887	UniProt:M4DP40	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF13	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0002547AB0	SEG:seg	:

Description

AT2G31070 (E=1e-109) TCP10 | TCP10 (TCP DOMAIN PROTEIN 10); transcription factor

Coordinates

chrA05:+:7143195..7144244

Molecular Weight (calculated)

38729.6 Da

IEP (calculated)

6.854

GRAVY (calculated)

-0.870

Length

349 amino acids

Sequence
(BLAST)

001: MGLKGYSAGD GVGEIIEVPG GHIIRATGRK DRHSKVFTSK GPRDRRVRLA AHTAIQFYDV QDRLQYDRPS KAVDWLIKKA KAAIDKLETT QEPPENDTTK
101: PGSSSSEPNL VDTQTQFVAA NLDPEDAMKT FFPATTTTSG GGTNMNFQNY PHHHDADNIV SRTTTTTPNL NQDLGLSLHP FQGNNINSTV VPETNNFATS
201: HFETFGRISG WNHHDLTMTS SSSPSEQQEE QERGNGGFMV NLHHHQPSMM TLLNSQQQQV FLGGQQQQQR GTLQSSLFPH SFRSWDHHHQ TTSDNHHHHH
301: HNQASPVMFA SSSQYGSHGM MMMQGLSFPI HGEEPTQPNS SSSPPNSHL

Best Arabidopsis Sequence Match ( AT2G31070.1 )
(BLAST)

001: MGLKGYSVGE GGGEIVEVQG GHIIRATGRK DRHSKVFTSK GPRDRRVRLS AHTAIQFYDV QDRLGYDRPS KAVDWLIKKA KTAIDKLELG ETTTTTTRQE
101: PVNTKPESPT LVFQRENNDQ TQFVAANLDP EDAMKTFFPA TTTTNGGGGT NINFQNYPHQ DDNNMVSRTT TPPPNLSQDL GLSLHPFQGN NNTVVVPETN
201: NFTTTHFDTF GRISGWNHHD LTMTSSSSSE HQQQEQEERS NGGFMVNHHP HHHHHQPSMM TLLNSQQQQV FLGGQQQQQQ RGTLQSSLFP HSFRSWDHHQ
301: TTSDHHHHQN QASSMFASSS QYGSHGMMMM QGLSFPNTTR LLHGEEATQP NSSSSPPNSH L

Arabidopsis Description

TCP10Transcription factor TCP10 [Source:UniProtKB/Swiss-Prot;Acc:O82277]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.