Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07432 | Canola | nucleus | 97.12 | 95.74 |
| Bra004212.1-P | Field mustard | nucleus | 76.08 | 77.42 |
| Bra034010.1-P | Field mustard | nucleus | 75.22 | 75.43 |
| AT1G67260.1 | Thale cress | nucleus | 70.61 | 68.25 |
| PGSC0003DMT400008673 | Potato | nucleus | 12.68 | 28.03 |
| PGSC0003DMT400026037 | Potato | cytosol, nucleus, plastid | 17.87 | 26.05 |
| Solyc02g089830.1.1 | Tomato | cytosol, nucleus, plastid | 17.87 | 25.73 |
| Solyc03g045030.1.1 | Tomato | nucleus | 13.54 | 25.68 |
| VIT_14s0083g00150.t01 | Wine grape | nucleus | 23.05 | 24.24 |
| KRH45185 | Soybean | plastid | 23.63 | 22.16 |
| KRH01497 | Soybean | plastid | 23.34 | 21.89 |
| Bra038350.1-P | Field mustard | nucleus | 19.02 | 19.7 |
| TraesCS5D01G002300.1 | Wheat | nucleus | 14.99 | 19.7 |
| KRG91334 | Soybean | nucleus | 21.04 | 19.47 |
| TraesCS5A01G001900.1 | Wheat | nucleus | 15.27 | 19.41 |
| KRH18263 | Soybean | plastid | 22.48 | 18.62 |
| KRG93829 | Soybean | nucleus, plastid | 22.19 | 18.51 |
| TraesCS5B01G002300.1 | Wheat | nucleus | 15.56 | 18.31 |
| Bra037579.1-P | Field mustard | nucleus | 14.7 | 17.89 |
| KRH35497 | Soybean | nucleus | 19.6 | 17.89 |
| Bra032365.1-P | Field mustard | nucleus | 16.14 | 17.61 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 16.71 | 17.58 |
| HORVU5Hr1G000490.1 | Barley | nucleus | 14.7 | 17.17 |
| HORVU4Hr1G007040.1 | Barley | nucleus | 17.58 | 17.09 |
| TraesCS4D01G040100.1 | Wheat | nucleus | 17.29 | 17.05 |
| TraesCS4B01G042700.1 | Wheat | nucleus | 17.29 | 16.95 |
| TraesCS4A01G271300.1 | Wheat | nucleus | 17.0 | 16.76 |
| Bra012600.1-P | Field mustard | nucleus | 18.16 | 16.49 |
| Bra010789.1-P | Field mustard | nucleus | 14.41 | 16.23 |
| Os03t0706500-01 | Rice | nucleus | 17.58 | 15.72 |
| Zm00001d033673_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 16.43 | 15.57 |
| EER93595 | Sorghum | cytosol, nucleus, peroxisome, plastid | 17.0 | 15.53 |
| Zm00001d013467_P001 | Maize | nucleus | 15.85 | 15.32 |
| Bra039158.1-P | Field mustard | nucleus | 13.54 | 15.21 |
| Bra005967.1-P | Field mustard | nucleus, plastid | 10.66 | 15.04 |
| Bra021586.1-P | Field mustard | nucleus | 14.99 | 14.86 |
| Bra030952.1-P | Field mustard | nucleus | 14.7 | 14.78 |
| Bra018280.1-P | Field mustard | nucleus | 14.12 | 14.04 |
| Bra029344.1-P | Field mustard | nucleus, plastid | 11.82 | 13.62 |
| Bra027284.1-P | Field mustard | nucleus | 15.85 | 13.55 |
| Bra001579.1-P | Field mustard | nucleus | 15.85 | 13.51 |
| Bra001710.1-P | Field mustard | nucleus | 15.56 | 12.71 |
| Bra012990.1-P | Field mustard | nucleus | 12.68 | 12.02 |
| Bra013304.1-P | Field mustard | nucleus, plastid | 6.63 | 9.62 |
| Bra001032.1-P | Field mustard | nucleus | 13.26 | 8.55 |
Protein Annotations
| MapMan:15.5.19 | EnsemblPlantsGene:Bra004097 | EnsemblPlants:Bra004097.1 | EnsemblPlants:Bra004097.1-P | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR017887 | UniProt:M4CIR3 | PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF41 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI00025413F7 | SEG:seg | : |
Description
AT1G67260 (E=3e-109) TCP1 | TCP1; DNA binding / transcription factor
Coordinates
chrA07:+:16831694..16832834
Molecular Weight (calculated)
39382.2 Da
IEP (calculated)
6.120
GRAVY (calculated)
-0.788
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSNNGYNN GSNNGVYPLS LYLPSLSGQQ DIIRNPYNHQ LTASPGQMLS AVPESLMDYM AFNSNNVMNQ QGFEIPEVSR EIKKAVKKDR HSKIHTAQGL
101: RDRRVRLSIE ISRQFFDLQD MLGFDKASET LDWLLKKSRR GINELVQEKK LNNNVEDFGN DGGNVVHEED NVGDNSFVYG SSPYSFEEEV LCEVKKAEKR
201: KKKTEMSNIS SKGSRAKAKG KAKGITIDMT NDHPETASEI IQTEIMDPFK RSIIFNEGEE MTHSFYKESI QESDNHECIT KKKVNLPMNM DQGYNQHYGA
301: LMLKDQGSSS NYNAILPQNF DCDYNPNPFI DQLFCGVTNT NFFRGFP
101: RDRRVRLSIE ISRQFFDLQD MLGFDKASET LDWLLKKSRR GINELVQEKK LNNNVEDFGN DGGNVVHEED NVGDNSFVYG SSPYSFEEEV LCEVKKAEKR
201: KKKTEMSNIS SKGSRAKAKG KAKGITIDMT NDHPETASEI IQTEIMDPFK RSIIFNEGEE MTHSFYKESI QESDNHECIT KKKVNLPMNM DQGYNQHYGA
301: LMLKDQGSSS NYNAILPQNF DCDYNPNPFI DQLFCGVTNT NFFRGFP
001: MSSSTNDYND GNNNGVYPLS LYLSSLSGHQ DIIHNPYNHQ LKASPGHMVS AVPESLIDYM AFKSNNVVNQ QGFEFPEVSK EIKKVVKKDR HSKIQTAQGI
101: RDRRVRLSIG IARQFFDLQD MLGFDKASKT LDWLLKKSRK AIKEVVQAKN LNNDDEDFGN IGGDVEQEEE KEEDDNGDKS FVYGLSPGYG EEEVVCEATK
201: AGIRKKKSEL RNISSKGLGA KARGKAKERT KEMMAYDNPE TASDITQSEI MDPFKRSIVF NEGEDMTHLF YKEPIEEFDN QESILTNMTL PTKMGQSYNQ
301: NNGILMLVDQ SSSSNYNTFL PQNLDYSYDQ NPFHDQTLYV VTDKNFPKGF L
101: RDRRVRLSIG IARQFFDLQD MLGFDKASKT LDWLLKKSRK AIKEVVQAKN LNNDDEDFGN IGGDVEQEEE KEEDDNGDKS FVYGLSPGYG EEEVVCEATK
201: AGIRKKKSEL RNISSKGLGA KARGKAKERT KEMMAYDNPE TASDITQSEI MDPFKRSIVF NEGEDMTHLF YKEPIEEFDN QESILTNMTL PTKMGQSYNQ
301: NNGILMLVDQ SSSSNYNTFL PQNLDYSYDQ NPFHDQTLYV VTDKNFPKGF L
Arabidopsis Description
TCP1Transcription factor TCP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYG7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.