Factsheet for Bra012990.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02180	Canola	nucleus	99.45	99.45
CDY58696	Canola	nucleus	97.81	98.35
AT5G60970.1	Thale cress	nucleus	84.97	86.39
Bra029344.1-P	Field mustard	nucleus, plastid	70.77	86.05
Bra005967.1-P	Field mustard	nucleus, plastid	43.99	65.45
PGSC0003DMT400063327	Potato	nucleus, plastid	32.51	34.59
Solyc03g115010.1.1	Tomato	plastid	31.97	34.31
GSMUA_Achr4P32850_001	Banana	nucleus	28.96	30.9
Bra039158.1-P	Field mustard	nucleus	25.14	29.77
GSMUA_Achr6P27420_001	Banana	nucleus	22.13	27.09
Bra010789.1-P	Field mustard	nucleus	17.21	20.45
Bra032365.1-P	Field mustard	nucleus	17.49	20.13
Bra030952.1-P	Field mustard	nucleus	16.94	17.97
Bra021586.1-P	Field mustard	nucleus	16.94	17.71
Bra001032.1-P	Field mustard	nucleus	25.96	17.66
Bra012600.1-P	Field mustard	nucleus	16.67	15.97
Bra027284.1-P	Field mustard	nucleus	17.49	15.76
Bra001579.1-P	Field mustard	nucleus	17.21	15.48
Bra018280.1-P	Field mustard	nucleus	14.48	15.19
Bra037579.1-P	Field mustard	nucleus	11.48	14.74
Bra004212.1-P	Field mustard	nucleus	13.11	14.08
Bra034010.1-P	Field mustard	nucleus	12.57	13.29
Bra004097.1-P	Field mustard	nucleus	12.02	12.68
Bra038350.1-P	Field mustard	nucleus	11.2	12.24
Bra001710.1-P	Field mustard	nucleus	12.3	10.59
Bra013304.1-P	Field mustard	nucleus, plastid	2.46	3.77

Protein Annotations

MapMan:15.5.19	EnsemblPlantsGene:Bra012990	EnsemblPlants:Bra012990.1	EnsemblPlants:Bra012990.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR017887	UniProt:M4D930	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF5	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0002540502	SEG:seg	:

Description

AT5G60970 (E=4e-120) TCP5 | TCP5 (TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 5); transcription factor

Coordinates

chrA03:-:21174353..21175453

Molecular Weight (calculated)

40700.4 Da

IEP (calculated)

6.679

GRAVY (calculated)

-0.904

Length

366 amino acids

Sequence
(BLAST)

001: MRSRECDEEE IQAKQEGDHS ENNNHQVNLN NMLQQQQQNQ PSSLSSSRQW TSAFRNPRIV RVSRTFGGKD RHSKVCTVRG LRDRRIRLSV PTAIQLYDLQ
101: DRLGLSQPSK VVDWLLEAAK DDVDKLPPLQ FPHGFNQMYP NLFFGNSGIG ESSSSTSAFP GTNLGFLESY DLGGSSSRTR SRIQETPRES FDLDKGKWIK
201: NDENANHHQD HGFDASHQHF SLTNPYNNSN ASSYYNLGHL QHSLDQSGNN VTVAISNVPS NNNNNNLNLP PPSSAGDGSQ LLFGPPPPAM SSLFPTYPSF
301: LGASHHQHHH VVDGAGNLQL FSSNANTASQ QQMMTGNSSL IRPFHHLMSS NHDTDRHSSD DNDSDS

Best Arabidopsis Sequence Match ( AT5G60970.1 )
(BLAST)

001: MRSGECDEEE IQAKQERDQN QNHQVNLNHM LQQQQPSSVS SSRQWTSAFR NPRIVRVSRT FGGKDRHSKV CTVRGLRDRR IRLSVPTAIQ LYDLQDRLGL
101: SQPSKVIDWL LEAAKDDVDK LPPLQFPHGF NQMYPNLIFG NSGFGESPSS TTSTTFPGTN LGFLENWDLG GSSRTRARLT DTTTTQRESF DLDKGKWIKN
201: DENSNQDHQG FNTNHQQQFP LTNPYNNTSA YYNLGHLQQS LDQSGNNVTV AISNVAANNN NNLNLHPPSS SAGDGSQLFF GPTPPAMSSL FPTYPSFLGA
301: SHHHHVVDGA GHLQLFSSNS NTASQQHMMP GNTSLIRPFH HLMSSNHDTD HHSSDNESDS

Arabidopsis Description

TCP5Transcription factor TCP5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FME3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.