Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
- plastid 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc06g069460.1.1 | Tomato | plastid | 27.7 | 34.17 |
GSMUA_Achr6P27420_001 | Banana | nucleus | 28.86 | 33.11 |
CDX81083 | Canola | nucleus, plastid | 23.32 | 32.79 |
AT5G08070.1 | Thale cress | nucleus, plastid | 23.03 | 32.64 |
CDX78321 | Canola | nucleus, plastid | 23.03 | 32.11 |
Bra005967.1-P | Field mustard | nucleus, plastid | 23.03 | 32.11 |
PGSC0003DMT400063327 | Potato | nucleus, plastid | 32.07 | 31.98 |
Solyc03g115010.1.1 | Tomato | plastid | 31.49 | 31.67 |
KRH63215 | Soybean | nucleus, plastid | 35.57 | 31.52 |
PGSC0003DMT400010453 | Potato | nucleus, plastid | 27.99 | 31.48 |
CDY68618 | Canola | nucleus, plastid | 27.7 | 31.46 |
CDY47005 | Canola | nucleus, plastid | 27.41 | 31.23 |
Bra029344.1-P | Field mustard | nucleus, plastid | 27.11 | 30.9 |
KRH54711 | Soybean | plastid | 34.99 | 30.77 |
CDY02180 | Canola | nucleus | 31.2 | 29.23 |
CDY58696 | Canola | nucleus | 30.9 | 29.12 |
Bra012990.1-P | Field mustard | nucleus | 30.9 | 28.96 |
KRH56798 | Soybean | nucleus | 32.07 | 28.13 |
AT5G60970.1 | Thale cress | nucleus | 29.45 | 28.06 |
KRH03150 | Soybean | nucleus, plastid | 31.78 | 28.02 |
GSMUA_Achr10P... | Banana | nucleus | 16.91 | 23.29 |
GSMUA_Achr8P19990_001 | Banana | nucleus | 16.33 | 23.24 |
GSMUA_Achr6P14430_001 | Banana | nucleus | 16.04 | 22.92 |
GSMUA_Achr3P31370_001 | Banana | nucleus | 15.45 | 20.31 |
GSMUA_Achr4P31520_001 | Banana | nucleus | 22.16 | 20.0 |
GSMUA_Achr2P12990_001 | Banana | nucleus | 21.87 | 19.84 |
GSMUA_Achr5P02530_001 | Banana | nucleus | 21.87 | 19.63 |
GSMUA_Achr10P... | Banana | nucleus | 14.87 | 19.25 |
GSMUA_Achr7P01160_001 | Banana | nucleus | 21.28 | 19.11 |
GSMUA_Achr4P22960_001 | Banana | nucleus | 21.28 | 19.11 |
GSMUA_Achr7P13980_001 | Banana | nucleus | 17.78 | 16.58 |
GSMUA_Achr2P21050_001 | Banana | mitochondrion | 12.24 | 16.09 |
GSMUA_Achr3P03540_001 | Banana | nucleus | 16.62 | 14.18 |
GSMUA_Achr5P06660_001 | Banana | mitochondrion, plastid | 18.95 | 13.8 |
GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 13.12 | 13.64 |
GSMUA_Achr2P22480_001 | Banana | cytosol | 12.24 | 12.96 |
Protein Annotations
MapMan:15.5.19 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr4G32850_001 | EnsemblPlants:GSMUA_Achr4P32850_001 |
EnsemblPlants:GSMUA_Achr4T32850_001 | InterPro:IPR017887 | UniProt:M0SU47 | PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 |
PANTHER:PTHR31072:SF5 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI000296CE65 | SEG:seg | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G32850_001]
Coordinates
chr4:+:29500965..29501996
Molecular Weight (calculated)
37187.3 Da
IEP (calculated)
9.164
GRAVY (calculated)
-0.576
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: MINRSREKEK ATRQEGATSD GKFPVSSRPW LGLRNPRIVR VSRAFGGKDR HSKVSTIRGL RDRRVRLSVP TAIQLYDLQD KLGVDQPSKA VDWLLAAAQH
101: EIDKLPPLPF PPASFTQLGQ SFPISTAFSY HHPITSQGLA LTLHDKDVKC ADETGDCPLA LFSSAAENDG VLGNKAAELA KFPGFSLSSS VRTDVTTRQV
201: IGEGKNDDNV RSYCAQVSEA CDNSLTGSGS NLIPHASHYY HSNPANSNAY EHQFGGNSSS PPSVPGSQLV FYASGGTPPM FPTYMTPPNG SSSRQSIHIP
301: SAASQDLRSS CETFLRSGSH VSVRPSQQRS SSGVHRPFDR HEN
101: EIDKLPPLPF PPASFTQLGQ SFPISTAFSY HHPITSQGLA LTLHDKDVKC ADETGDCPLA LFSSAAENDG VLGNKAAELA KFPGFSLSSS VRTDVTTRQV
201: IGEGKNDDNV RSYCAQVSEA CDNSLTGSGS NLIPHASHYY HSNPANSNAY EHQFGGNSSS PPSVPGSQLV FYASGGTPPM FPTYMTPPNG SSSRQSIHIP
301: SAASQDLRSS CETFLRSGSH VSVRPSQQRS SSGVHRPFDR HEN
001: MNIVSWKDAN DEVAGGATTR REREVKEDQE ETEVRATSGK TVIKKQPTSI SSSSSSWMKS KDPRIVRVSR AFGGKDRHSK VCTLRGLRDR RVRLSVPTAI
101: QLYDLQERLG VDQPSKAVDW LLDAAKEEID ELPPLPISPE NFSIFNHHQS FLNLGQRPGQ DPTQLGFKIN GCVQKSTTTS REENDREKGE NDVVYTNNHH
201: VGSYGTYHNL EHHHHHHQHL SLQADYHSHQ LHSLVPFPSQ ILVCPMTTSP TTTTIQSLFP SSSSAGSGTM ETLDPRQMVS HFQMPLMGNS SSSSSQNIST
301: LYSLLHGSSS NNGGRDIDNR MSSVQFNRTN STTTANMSRH LGSERCTSRG SDHHM
101: QLYDLQERLG VDQPSKAVDW LLDAAKEEID ELPPLPISPE NFSIFNHHQS FLNLGQRPGQ DPTQLGFKIN GCVQKSTTTS REENDREKGE NDVVYTNNHH
201: VGSYGTYHNL EHHHHHHQHL SLQADYHSHQ LHSLVPFPSQ ILVCPMTTSP TTTTIQSLFP SSSSAGSGTM ETLDPRQMVS HFQMPLMGNS SSSSSQNIST
301: LYSLLHGSSS NNGGRDIDNR MSSVQFNRTN STTTANMSRH LGSERCTSRG SDHHM
Arabidopsis Description
TCP13Transcription factor TCP13 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7W5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.