Factsheet for AT5G60970.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012990.1-P	Field mustard	nucleus	86.39	84.97
CDY02180	Canola	nucleus	86.11	84.7
CDY58696	Canola	nucleus	85.56	84.62
Bra029344.1-P	Field mustard	nucleus, plastid	69.17	82.72
CDY47005	Canola	nucleus, plastid	68.61	82.06
CDY68618	Canola	nucleus, plastid	68.61	81.79
AT5G08070.1	Thale cress	nucleus, plastid	45.56	67.77
PGSC0003DMT400063327	Potato	nucleus, plastid	33.06	34.59
Solyc03g115010.1.1	Tomato	plastid	32.22	34.02
GSMUA_Achr4P32850_001	Banana	nucleus	28.06	29.45
GSMUA_Achr6P27420_001	Banana	nucleus	23.61	28.43
AT3G02150.2	Thale cress	nucleus	26.11	26.48
AT1G30210.1	Thale cress	nucleus	17.22	19.14
AT4G18390.1	Thale cress	nucleus	17.5	17.26
AT1G53230.1	Thale cress	nucleus	17.78	16.37
AT2G31070.1	Thale cress	nucleus	15.56	15.51
AT3G15030.1	Thale cress	nucleus	17.22	14.76
AT1G67260.1	Thale cress	nucleus	13.06	13.09
AT1G68800.2	Thale cress	nucleus	12.5	12.43
AT3G18550.3	Thale cress	nucleus	11.39	9.45

Protein Annotations

MapMan:15.5.19	EntrezGene:836218	UniProt:A0A178USK0	ProteinID:AED97405.1	ArrayExpress:AT5G60970	EnsemblPlantsGene:AT5G60970
RefSeq:AT5G60970	TAIR:AT5G60970	RefSeq:AT5G60970-TAIR-G	EnsemblPlants:AT5G60970.1	TAIR:AT5G60970.1	ProteinID:BAB10646.1
EMBL:BT029489	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009653	GO:GO:0009965	GO:GO:0009987	GO:GO:0030154	GO:GO:0045962
GO:GO:0048366	InterPro:IPR017887	RefSeq:NP_200905.1	ProteinID:OAO95681.1	PFAM:PF03634	PO:PO:0000013
PO:PO:0000037	PO:PO:0000056	PO:PO:0000293	PO:PO:0001054	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0008019
PO:PO:0009001	PO:PO:0009006	PO:PO:0009025	PO:PO:0009029	PO:PO:0009046	PO:PO:0009047
PO:PO:0020030	PO:PO:0020038	PO:PO:0025022	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF5
UniProt:Q9FME3	Symbol:TCP5	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI00000A1E10	SEG:seg

Description

TCP5Transcription factor TCP5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FME3]

Coordinates

chr5:-:24535337..24537244

Molecular Weight (calculated)

40165.0 Da

IEP (calculated)

6.834

GRAVY (calculated)

-0.863

Length

360 amino acids

Sequence
(BLAST)

001: MRSGECDEEE IQAKQERDQN QNHQVNLNHM LQQQQPSSVS SSRQWTSAFR NPRIVRVSRT FGGKDRHSKV CTVRGLRDRR IRLSVPTAIQ LYDLQDRLGL
101: SQPSKVIDWL LEAAKDDVDK LPPLQFPHGF NQMYPNLIFG NSGFGESPSS TTSTTFPGTN LGFLENWDLG GSSRTRARLT DTTTTQRESF DLDKGKWIKN
201: DENSNQDHQG FNTNHQQQFP LTNPYNNTSA YYNLGHLQQS LDQSGNNVTV AISNVAANNN NNLNLHPPSS SAGDGSQLFF GPTPPAMSSL FPTYPSFLGA
301: SHHHHVVDGA GHLQLFSSNS NTASQQHMMP GNTSLIRPFH HLMSSNHDTD HHSSDNESDS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.