Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012990.1-P | Field mustard | nucleus | 98.35 | 97.81 |
| CDY02180 | Canola | nucleus | 98.35 | 97.81 |
| CDY68618 | Canola | nucleus, plastid | 71.15 | 85.76 |
| AT5G60970.1 | Thale cress | nucleus | 84.62 | 85.56 |
| CDY47005 | Canola | nucleus, plastid | 69.78 | 84.39 |
| CDX78321 | Canola | nucleus, plastid | 43.96 | 65.04 |
| CDX81083 | Canola | nucleus, plastid | 42.86 | 63.93 |
| PGSC0003DMT400063327 | Potato | nucleus, plastid | 32.42 | 34.3 |
| Solyc03g115010.1.1 | Tomato | plastid | 31.87 | 34.02 |
| GSMUA_Achr4P32850_001 | Banana | nucleus | 29.12 | 30.9 |
| CDX74272 | Canola | nucleus | 25.0 | 28.44 |
| CDX91977 | Canola | nucleus | 25.0 | 28.44 |
| GSMUA_Achr6P27420_001 | Banana | nucleus | 22.25 | 27.09 |
| CDY60475 | Canola | endoplasmic reticulum, golgi | 25.0 | 22.92 |
| CDY59229 | Canola | nucleus | 18.13 | 21.09 |
| CDX90234 | Canola | nucleus | 17.58 | 20.78 |
| CDY43255 | Canola | endoplasmic reticulum, golgi | 24.45 | 20.75 |
| CDY26285 | Canola | nucleus | 17.86 | 20.44 |
| CDX99891 | Canola | nucleus | 17.58 | 20.19 |
| CDY01537 | Canola | nucleus | 15.38 | 18.24 |
| CDY02519 | Canola | nucleus | 16.48 | 17.44 |
| CDY20097 | Canola | nucleus | 17.03 | 17.37 |
| CDY60877 | Canola | nucleus | 16.48 | 16.76 |
| CDY68596 | Canola | cytosol, nucleus | 17.31 | 16.32 |
| CDY55633 | Canola | nucleus | 17.03 | 16.23 |
| CDX75802 | Canola | nucleus | 17.86 | 16.09 |
| CDX82453 | Canola | nucleus | 17.86 | 16.05 |
| CDY10772 | Canola | nucleus | 14.56 | 15.32 |
| CDY10771 | Canola | nucleus | 14.56 | 15.27 |
| CDY24724 | Canola | nucleus | 14.56 | 15.23 |
| CDX95517 | Canola | nucleus | 11.81 | 15.19 |
| CDY18525 | Canola | nucleus | 11.54 | 14.84 |
| CDX96104 | Canola | nucleus | 14.29 | 14.81 |
| CDY01793 | Canola | nucleus | 14.29 | 14.73 |
| CDY12633 | Canola | nucleus | 12.64 | 14.29 |
| CDY46042 | Canola | nucleus | 13.19 | 13.87 |
| CDY07432 | Canola | nucleus | 12.36 | 12.78 |
| CDY28898 | Canola | nucleus | 12.36 | 12.71 |
| CDY33597 | Canola | nucleus | 10.99 | 12.38 |
| CDX81550 | Canola | nucleus | 11.26 | 12.13 |
| CDY45852 | Canola | nucleus | 10.99 | 12.05 |
| CDY62798 | Canola | nucleus | 12.91 | 11.44 |
| CDX82339 | Canola | nucleus | 12.64 | 10.85 |
| CDY52898 | Canola | nucleus | 12.36 | 10.59 |
| CDX97627 | Canola | mitochondrion | 4.4 | 5.84 |
| CDX78849 | Canola | nucleus, plastid | 2.2 | 3.35 |
Protein Annotations
| MapMan:15.5.19 | UniProt:A0A078J6M4 | EnsemblPlants:CDY58696 | ProteinID:CDY58696 | ProteinID:CDY58696.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00025021001 | InterPro:IPR017887 | PFAM:PF03634 | PFscan:PS51369 |
| PANTHER:PTHR31072 | PANTHER:PTHR31072:SF5 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI0004EE0269 | SEG:seg |
Description
BnaC07g49840DBnaC07g49840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J6M4]
Coordinates
chrLK033690:-:47729..48823
Molecular Weight (calculated)
40543.2 Da
IEP (calculated)
6.679
GRAVY (calculated)
-0.903
Length
364 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSRDCDEEE IQAKQEGDHN ENNNHQVNLN NILQQQNQPS SLSSSRQWTS AFRNPRIVRV SRTFGGKDRH SKVCTVRGLR DRRIRLSVPT AIQLYDLQDR
101: LGLSQPSKVV DWLLEAAKDD VDKLPPLQFP HGFNQMYPNL FFGNSGIGES SSSTSAFPGT NLGFLESYDL GGSSSRTRSR IQETPRESFD LDKGKWIKND
201: ENADHHQDHG FDASHQHFSL TNPYNNSNAS SYYNLGHLQH SLDQSGNNVT VAISNVPSNN NNNNLNLPPP SSAGDGSQLF FGPPPPAMSS LFPTYPSFLG
301: ASHHQHHHVV DGAGNLQLFR SNANTASQQQ MMTGNSSLIR PFHHLMSSNH DTDRHSSDDN DSDS
101: LGLSQPSKVV DWLLEAAKDD VDKLPPLQFP HGFNQMYPNL FFGNSGIGES SSSTSAFPGT NLGFLESYDL GGSSSRTRSR IQETPRESFD LDKGKWIKND
201: ENADHHQDHG FDASHQHFSL TNPYNNSNAS SYYNLGHLQH SLDQSGNNVT VAISNVPSNN NNNNLNLPPP SSAGDGSQLF FGPPPPAMSS LFPTYPSFLG
301: ASHHQHHHVV DGAGNLQLFR SNANTASQQQ MMTGNSSLIR PFHHLMSSNH DTDRHSSDDN DSDS
001: MRSGECDEEE IQAKQERDQN QNHQVNLNHM LQQQQPSSVS SSRQWTSAFR NPRIVRVSRT FGGKDRHSKV CTVRGLRDRR IRLSVPTAIQ LYDLQDRLGL
101: SQPSKVIDWL LEAAKDDVDK LPPLQFPHGF NQMYPNLIFG NSGFGESPSS TTSTTFPGTN LGFLENWDLG GSSRTRARLT DTTTTQRESF DLDKGKWIKN
201: DENSNQDHQG FNTNHQQQFP LTNPYNNTSA YYNLGHLQQS LDQSGNNVTV AISNVAANNN NNLNLHPPSS SAGDGSQLFF GPTPPAMSSL FPTYPSFLGA
301: SHHHHVVDGA GHLQLFSSNS NTASQQHMMP GNTSLIRPFH HLMSSNHDTD HHSSDNESDS
101: SQPSKVIDWL LEAAKDDVDK LPPLQFPHGF NQMYPNLIFG NSGFGESPSS TTSTTFPGTN LGFLENWDLG GSSRTRARLT DTTTTQRESF DLDKGKWIKN
201: DENSNQDHQG FNTNHQQQFP LTNPYNNTSA YYNLGHLQQS LDQSGNNVTV AISNVAANNN NNLNLHPPSS SAGDGSQLFF GPTPPAMSSL FPTYPSFLGA
301: SHHHHVVDGA GHLQLFSSNS NTASQQHMMP GNTSLIRPFH HLMSSNHDTD HHSSDNESDS
Arabidopsis Description
TCP5Transcription factor TCP5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FME3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.