Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55633 | Canola | nucleus | 74.59 | 59.95 |
| Bra012600.1-P | Field mustard | nucleus | 73.29 | 58.9 |
| CDY60877 | Canola | nucleus | 65.15 | 55.87 |
| AT4G18390.1 | Thale cress | nucleus | 63.52 | 53.42 |
| CDX78849 | Canola | nucleus, plastid | 29.64 | 38.08 |
| CDX99891 | Canola | nucleus | 36.48 | 35.33 |
| CDY26285 | Canola | nucleus | 36.48 | 35.22 |
| CDX90234 | Canola | nucleus | 32.57 | 32.47 |
| CDY59229 | Canola | nucleus | 32.9 | 32.27 |
| PGSC0003DMT400051253 | Potato | nucleus | 31.6 | 28.36 |
| Solyc08g048370.2.1 | Tomato | cytosol | 28.99 | 27.3 |
| Solyc08g048390.1.1 | Tomato | nucleus | 34.2 | 27.13 |
| CDX81083 | Canola | nucleus, plastid | 17.26 | 21.72 |
| CDX78321 | Canola | nucleus, plastid | 17.26 | 21.54 |
| CDX74272 | Canola | nucleus | 19.54 | 18.75 |
| CDX91977 | Canola | nucleus | 19.54 | 18.75 |
| CDY47005 | Canola | nucleus, plastid | 18.24 | 18.6 |
| CDY02519 | Canola | nucleus | 20.85 | 18.6 |
| CDY68618 | Canola | nucleus, plastid | 18.24 | 18.54 |
| CDY10772 | Canola | nucleus | 20.52 | 18.21 |
| CDY10771 | Canola | nucleus | 20.52 | 18.16 |
| CDY24724 | Canola | nucleus | 20.52 | 18.1 |
| CDY20097 | Canola | nucleus | 20.52 | 17.65 |
| CDY68596 | Canola | cytosol, nucleus | 21.82 | 17.36 |
| CDX75802 | Canola | nucleus | 22.48 | 17.08 |
| CDX82453 | Canola | nucleus | 22.48 | 17.04 |
| CDY60475 | Canola | endoplasmic reticulum, golgi | 20.52 | 15.87 |
| CDY02180 | Canola | nucleus | 18.57 | 15.57 |
| CDY58696 | Canola | nucleus | 18.24 | 15.38 |
| CDY01793 | Canola | nucleus | 17.26 | 15.01 |
| CDX96104 | Canola | nucleus | 16.94 | 14.81 |
| CDY46042 | Canola | nucleus | 16.61 | 14.74 |
| CDY12633 | Canola | nucleus | 15.31 | 14.6 |
| CDY07432 | Canola | nucleus | 16.61 | 14.49 |
| CDY43255 | Canola | endoplasmic reticulum, golgi | 20.2 | 14.45 |
| CDY28898 | Canola | nucleus | 16.29 | 14.12 |
| CDY18525 | Canola | nucleus | 12.7 | 13.78 |
| CDX95517 | Canola | nucleus | 12.7 | 13.78 |
| CDY33597 | Canola | nucleus | 13.36 | 12.69 |
| CDX81550 | Canola | nucleus | 13.68 | 12.43 |
| CDY45852 | Canola | nucleus | 13.36 | 12.35 |
| CDY52898 | Canola | nucleus | 14.66 | 10.59 |
| CDY62798 | Canola | nucleus | 13.68 | 10.22 |
| CDX82339 | Canola | nucleus | 14.01 | 10.14 |
| CDX97627 | Canola | mitochondrion | 5.54 | 6.2 |
Protein Annotations
| EnsemblPlants:CDY01537 | EnsemblPlantsGene:GSBRNA2T00112568001 | InterPro:IPR017887 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF2 | PFAM:PF03634 | PFscan:PS51369 | ProteinID:CDY01537 | ProteinID:CDY01537.1 | SEG:seg |
| UniParc:UPI0004EF1859 | MapMan:15.5.19 | : | : | : | : |
Description
BnaC07g35270D
Coordinates
chrLK031927:-:470215..472709
Molecular Weight (calculated)
34373.8 Da
IEP (calculated)
10.058
GRAVY (calculated)
-0.879
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MVIEKLRNEI IGDDEMIGDL MKNNNGDVVD NSNNRLSRWH HNSSRIIRVS RASGGKDRHS KVWTSKGPRD RRVRLSVSTA LQFYDLQDRL GYDQPSKAVE
101: WLIKAAEDSI SELPSLNNTN FPMNDDDNQI PTLTGAANSL SKSACSSNSD TSKNSSVFQL RFDSRVGSDP LPDPNKLSPL LRSSSSSSSR VFLRSRPSDI
201: SGRIQRRWSF QSRLQHVDNL RGVHRVQWFQ QGDPSVQCNK SSSVFSCQST EVSIIRSGGG GPQFLFGTGG LPAENQHPHH NNNNNHQFQL YYENGCRNSD
301: QKGKAKN
101: WLIKAAEDSI SELPSLNNTN FPMNDDDNQI PTLTGAANSL SKSACSSNSD TSKNSSVFQL RFDSRVGSDP LPDPNKLSPL LRSSSSSSSR VFLRSRPSDI
201: SGRIQRRWSF QSRLQHVDNL RGVHRVQWFQ QGDPSVQCNK SSSVFSCQST EVSIIRSGGG GPQFLFGTGG LPAENQHPHH NNNNNHQFQL YYENGCRNSD
301: QKGKAKN
001: MIGDLMKNNN NGDVVDNEVN NRLSRWHHNS SRIIRVSRAS GGKDRHSKVL TSKGPRDRRV RLSVSTALQF YDLQDRLGYD QPSKAVEWLI KAAEDSISEL
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN
101: PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA
201: PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL
301: QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE NGCRNSSEHK GKGKN
Arabidopsis Description
TCP2Transcription factor TCP2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V43]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.