CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004097.1-P	Field mustard	nucleus	95.74	97.12
CDY28898	Canola	nucleus	94.89	94.35
CDY12633	Canola	nucleus	69.6	76.09
CDY01793	Canola	nucleus	76.14	75.92
CDX96104	Canola	nucleus	75.57	75.78
CDY46042	Canola	nucleus	73.86	75.14
AT1G67260.1	Thale cress	nucleus	70.74	69.36
PGSC0003DMT400008673	Potato	nucleus	13.07	29.3
PGSC0003DMT400026037	Potato	cytosol, nucleus, plastid	18.47	27.31
Solyc02g089830.1.1	Tomato	cytosol, nucleus, plastid	18.47	26.97
Solyc03g045030.1.1	Tomato	nucleus	13.92	26.78
VIT_14s0083g00150.t01	Wine grape	nucleus	23.3	24.85
KRH45185	Soybean	plastid	23.86	22.7
KRH01497	Soybean	plastid	23.58	22.43
CDY45852	Canola	nucleus	19.32	20.48
CDX81550	Canola	nucleus	19.03	19.82
KRG91334	Soybean	nucleus	21.02	19.73
TraesCS5D01G002300.1	Wheat	nucleus	14.77	19.7
CDY33597	Canola	nucleus	17.9	19.5
TraesCS5A01G001900.1	Wheat	nucleus	15.06	19.41
KRG93829	Soybean	nucleus, plastid	22.16	18.75
CDY18525	Canola	nucleus	15.06	18.73
KRH18263	Soybean	plastid	22.16	18.62
CDX99891	Canola	nucleus	16.76	18.61
CDX95517	Canola	nucleus	14.77	18.37
TraesCS5B01G002300.1	Wheat	nucleus	15.34	18.31
CDY26285	Canola	nucleus	16.48	18.24
HORVU4Hr1G007040.1	Barley	nucleus	18.47	18.21
KRH35497	Soybean	nucleus	19.6	18.16
TraesCS4D01G040100.1	Wheat	nucleus	17.9	17.9
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	16.76	17.88
TraesCS4B01G042700.1	Wheat	nucleus	17.9	17.8
TraesCS4A01G271300.1	Wheat	nucleus	17.61	17.61
CDY60877	Canola	nucleus	17.9	17.6
HORVU5Hr1G000490.1	Barley	nucleus	14.49	17.17
CDY59229	Canola	nucleus	14.77	16.61
CDY01537	Canola	nucleus	14.49	16.61
CDX90234	Canola	nucleus	14.49	16.56
Os03t0706500-01	Rice	nucleus	18.18	16.49
Zm00001d033673_P001	Maize	cytosol, nucleus, peroxisome, plastid	17.05	16.39
EER93595	Sorghum	cytosol, nucleus, peroxisome, plastid	17.61	16.32
Zm00001d013467_P001	Maize	nucleus	16.48	16.16
CDX81083	Canola	nucleus, plastid	11.08	15.98
CDX78321	Canola	nucleus, plastid	11.08	15.85
CDY55633	Canola	nucleus	17.05	15.71
CDY02519	Canola	nucleus	15.06	15.41
CDX74272	Canola	nucleus	13.64	15.0
CDX91977	Canola	nucleus	13.64	15.0
CDY20097	Canola	nucleus	15.06	14.85
CDY10772	Canola	nucleus	14.2	14.45
CDY10771	Canola	nucleus	14.2	14.41
CDY24724	Canola	nucleus	14.2	14.37
CDY68596	Canola	cytosol, nucleus	15.62	14.25
CDY47005	Canola	nucleus, plastid	11.93	13.95
CDX75802	Canola	nucleus	15.91	13.86
CDX82453	Canola	nucleus	15.91	13.83
CDY62798	Canola	nucleus	15.91	13.63
CDY68618	Canola	nucleus, plastid	11.65	13.58
CDX82339	Canola	nucleus	15.91	13.21
CDY52898	Canola	nucleus	15.62	12.94
CDY58696	Canola	nucleus	12.78	12.36
CDY02180	Canola	nucleus	12.78	12.3
CDY60475	Canola	endoplasmic reticulum, golgi	13.64	12.09
CDY43255	Canola	endoplasmic reticulum, golgi	14.2	11.65
CDX78849	Canola	nucleus, plastid	6.53	9.62
CDX97627	Canola	mitochondrion	4.26	5.47

Protein Annotations

MapMan:15.5.19	UniProt:A0A078F2Y5	EnsemblPlants:CDY07432	ProteinID:CDY07432	ProteinID:CDY07432.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00124424001	InterPro:IPR017887	PFAM:PF03634	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF41	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0004EDF034	SEG:seg

Description

BnaA07g25110DBnaA07g25110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F2Y5]

Coordinates

chrLK031978:+:694814..697219

Molecular Weight (calculated)

39990.7 Da

IEP (calculated)

5.306

GRAVY (calculated)

-0.792

Length

352 amino acids

Sequence
(BLAST)

001: MSSSNNGYNN GSNNGVYPLS LYLPSLSGQQ DIIRNPYNHQ LTASPGQMLS AVPESLMDYM EFNSNNVMNQ QSFEIPEVSR EIKKAVKKDR HSKIHTAQGL
101: RDRRVRLSIG ISRQFFDLQD MLGFDKASKT LDWLLKKSRR AIKELVQEKK LNNNVEDFGN DGGNVVHEED DYDDDNVGDN SFVYGSSPYS FEEEVLCEVK
201: KAEKRKKKTE MSNISSKGSR AKAKGKAKGI TIDMTNDHPE TASEIIQTEI MDPFKRSIIF NEGEEMTHSF YKESIQESDN HECITKTEVN LPMNMDQGYN
301: QHYGALMLKD QGSSSNYNAI LPQNFDCDYN PNPFIDQLFC GVTNTNFFRG IV

Best Arabidopsis Sequence Match ( AT1G67260.3 )
(BLAST)

001: MSSSTNDYND GNNNGVYPLS LYLSSLSGHQ DIIHNPYNHQ LKASPGHMVS AVPESLIDYM AFKSNNVVNQ QGFEFPEVSK EIKKVVKKDR HSKIQTAQGI
101: RDRRVRLSIG IARQFFDLQD MLGFDKASKT LDWLLKKSRK AIKEVVQAKN LNNDDEDFGN IGGDVEQEEE KEEDDNGDKS FVYGLSPGYG EEEVVCEATK
201: AGIRKKKSEL RNISSKGLGA KARGKAKERT KEMMAYDNPE TASDITQSEI MDPFKRSIVF NEGEDMTHLF YKEPIEEFDN QESILTNMTL PTKMGQSYNQ
301: NNGILMLVDQ SSSSNYNTFL PQNLDYSYDQ NPFHDQTLYV VTDKNFPKGF L

Arabidopsis Description

TCP1Transcription factor TCP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYG7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.