Factsheet for GSMUA_Achr10P25520_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008673	Potato	nucleus	13.94	29.3
Solyc03g045030.1.1	Tomato	nucleus	16.06	28.96
PGSC0003DMT400026037	Potato	cytosol, nucleus, plastid	20.3	28.15
Solyc02g089830.1.1	Tomato	cytosol, nucleus, plastid	20.3	27.8
GSMUA_Achr2P21050_001	Banana	mitochondrion	21.52	27.2
GSMUA_Achr2P22480_001	Banana	cytosol	25.45	25.93
KRH45185	Soybean	plastid	28.18	25.14
KRH01497	Soybean	plastid	27.58	24.59
VIT_14s0083g00150.t01	Wine grape	nucleus	24.55	24.55
KRG91334	Soybean	nucleus	25.45	22.4
KRH18263	Soybean	plastid	27.58	21.72
KRG93829	Soybean	nucleus, plastid	26.97	21.39
CDY33597	Canola	nucleus	20.91	21.36
PGSC0003DMT400019324	Potato	nucleus	24.55	21.26
CDX81550	Canola	nucleus	21.52	21.01
Solyc04g006980.1.1	Tomato	nucleus	23.64	20.8
CDY45852	Canola	nucleus	20.91	20.78
VIT_01s0011g02920.t01	Wine grape	nucleus	27.58	20.78
Bra038350.1-P	Field mustard	nucleus	20.91	20.6
KRH35497	Soybean	nucleus	23.64	20.53
AT1G68800.2	Thale cress	nucleus	20.91	19.06
Solyc05g009900.1.1	Tomato	nucleus	20.3	18.98
GSMUA_Achr8P19990_001	Banana	nucleus	13.64	18.67
PGSC0003DMT400002153	Potato	nucleus	19.39	18.08
GSMUA_Achr10P...	Banana	nucleus	13.33	17.67
Bra004212.1-P	Field mustard	nucleus	18.18	17.6
CDY01793	Canola	nucleus	18.79	17.56
CDY12633	Canola	nucleus	16.97	17.39
GSMUA_Achr10P...	Banana	nucleus	13.94	17.36
GSMUA_Achr3P31370_001	Banana	nucleus	13.33	16.86
CDX96104	Canola	nucleus	17.88	16.81
CDY07432	Canola	nucleus	17.88	16.76
Bra004097.1-P	Field mustard	nucleus	17.58	16.71
GSMUA_Achr6P14430_001	Banana	nucleus	12.12	16.67
AT1G67260.1	Thale cress	nucleus	17.88	16.43
CDY28898	Canola	nucleus	17.58	16.38
Bra034010.1-P	Field mustard	nucleus	16.97	16.18
CDY46042	Canola	nucleus	16.67	15.9
GSMUA_Achr2P12990_001	Banana	nucleus	15.45	13.49
GSMUA_Achr4P32850_001	Banana	nucleus	13.64	13.12
GSMUA_Achr6P27420_001	Banana	nucleus	11.82	13.04
GSMUA_Achr7P01160_001	Banana	nucleus	14.85	12.83
GSMUA_Achr4P22960_001	Banana	nucleus	14.85	12.83
GSMUA_Achr7P13980_001	Banana	nucleus	13.94	12.5
GSMUA_Achr5P02530_001	Banana	nucleus	13.94	12.04
GSMUA_Achr4P31520_001	Banana	nucleus	13.64	11.84
GSMUA_Achr3P03540_001	Banana	nucleus	13.33	10.95
GSMUA_Achr5P06660_001	Banana	mitochondrion, plastid	14.55	10.19

Protein Annotations

MapMan:15.5.19	InterPro:CYC/TB1_R_domain	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr10G25520_001
EnsemblPlants:GSMUA_Achr10P25520_001	EnsemblPlants:GSMUA_Achr10T25520_001	InterPro:IPR017887	InterPro:IPR017888	UniProt:M0RLC6	PFAM:PF03634
PFscan:PS51369	PFscan:PS51370	PANTHER:PTHR31072	PANTHER:PTHR31072:SF18	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP
UniParc:UPI000294BCC7	SEG:seg	:	:	:	:

Description

Putative Transcription factor TEOSINTE BRANCHED 1 [Source:GMGC_GENE;Acc:GSMUA_Achr10G25520_001]

Coordinates

chr10:+:29489587..29490579

Molecular Weight (calculated)

36660.8 Da

IEP (calculated)

10.798

GRAVY (calculated)

-0.659

Length

330 amino acids

Sequence
(BLAST)

001: MLPFPHCSNS LEKPFGKQLE LNPIPPPSNP YFPIFASDGL PLPLGAVTGA VPLPSPPSLP PVDNSLATAS PLMRKKRSGS FTRKRSWRND RNSKILTAKG
101: PRDRRIRLSN EVARKFFDLQ DMLGFDQGSK TVQWLFNMSK HAIQELTAIS DPQLGGLGIQ SPASFTLGLE KSTMESDSQG KSTTKLVTAT SVKNSKNEKQ
201: LIKPSGNAGS NLMRARESRA KARARARERT TEKRRMWLLS STIASHATRN EGSHLLNLSS SLLGSIAEME ARQRSSSHTQ RIRLSDQRNY EFPAQDGPCL
301: IPIFGYSEKI ADRNDMDNIL QEQSDMERMP

Best Arabidopsis Sequence Match ( AT1G68800.2 )
(BLAST)

001: MFPSLDTNGY DLFDPFIPHQ TTMFPSFITH IQSPNSHHHY SSPSFPFSSD FLESFDESFL INQFLLQQQD VAANVVESPW KFCKKLELKK KNEKCVDGST
101: SQEVQWRRTV KKRDRHSKIC TAQGPRDRRM RLSLQIARKF FDLQDMLGFD KASKTIEWLF SKSKTSIKQL KERVAASEGG GKDEHLQVDE KEKDETLKLR
201: VSKRRTKTME SSFKTKESRE RARKRARERT MAKMKMRLFE TSETISDPHQ ETREIKITNG VQLLEKENKE QEWSNTNDVH MVEYQMDSVS IIEKFLGLTS
301: DSSSSSIFGD SEECYTSLSS VRGTISAAGM STPREHNTTS IATVDEEKSP ISSFSLYDYL CY

Arabidopsis Description

BRC2TCP domain protein 12 [Source:TAIR;Acc:AT1G68800]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.