Factsheet for GSMUA_Achr3P31370_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P19990_001	Banana	nucleus	43.3	46.89
GSMUA_Achr10P...	Banana	nucleus	44.06	46.18
GSMUA_Achr6P14430_001	Banana	nucleus	39.46	42.92
GSMUA_Achr10P...	Banana	nucleus	32.95	32.45
GSMUA_Achr3P03540_001	Banana	nucleus	49.04	31.84
GSMUA_Achr7P13980_001	Banana	nucleus	44.83	31.79
GSMUA_Achr5P06660_001	Banana	mitochondrion, plastid	45.98	25.48
KXG33398	Sorghum	nucleus	39.08	22.62
Zm00001d043423_P001	Maize	nucleus	36.4	21.89
Os01t0755500-01	Rice	cytosol, mitochondrion	36.78	21.52
GSMUA_Achr2P12990_001	Banana	nucleus	28.74	19.84
GSMUA_Achr7P01160_001	Banana	nucleus	28.74	19.63
GSMUA_Achr5P02530_001	Banana	nucleus	27.59	18.85
GSMUA_Achr4P31520_001	Banana	nucleus	27.2	18.68
GSMUA_Achr4P22960_001	Banana	nucleus	27.2	18.59
GSMUA_Achr6P27420_001	Banana	nucleus	20.31	17.73
CDX97627	Canola	mitochondrion	16.48	15.69
GSMUA_Achr4P32850_001	Banana	nucleus	20.31	15.45
Zm00001d012725_P002	Maize	plastid	36.4	13.61
GSMUA_Achr2P21050_001	Banana	mitochondrion	13.41	13.41
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	16.86	13.33
GSMUA_Achr2P22480_001	Banana	cytosol	14.56	11.73
HORVU0Hr1G006890.2	Barley	cytosol	8.81	10.7

Protein Annotations

MapMan:15.5.19	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr3G31370_001
EnsemblPlants:GSMUA_Achr3P31370_001	EnsemblPlants:GSMUA_Achr3T31370_001	InterPro:IPR017887	UniProt:M0SJF1	PFAM:PF03634	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF13	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000296155D	SEG:seg

Description

TCP family transcription factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G31370_001]

Coordinates

chr3:+:29712585..29713688

Molecular Weight (calculated)

29312.1 Da

IEP (calculated)

7.473

GRAVY (calculated)

-0.680

Length

261 amino acids

Sequence
(BLAST)

001: MEESNRRHYN RRRWRPELAG EIVEVPGGHI VRSTGRKDRH SKVYTAKGLR DRRVRLSAHT AIQFYDVQDR LGYDRPSKAV DWLIQNAKAA IEQLAELPRH
101: HAPAYECIEV NEQPMQAASD GHNSIEQSLS DAKTTMVWWN AGNTSAGSGG EFMHSAALPP QSAVLHLVNS QFQICTQREP LQSSNFPSFR AWRNPTALHP
201: SLVSTVADAF VSESYGGFSG FHIPTRIQGE EQHNGIATIH SASPQEYKLR ERDDANATLD F

Best Arabidopsis Sequence Match ( AT3G15030.1 )
(BLAST)

001: MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH

Arabidopsis Description

TCP4TCP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.