Factsheet for GSMUA_Achr6P14430_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P19990_001	Banana	nucleus	50.83	50.62
GSMUA_Achr10P...	Banana	nucleus	52.08	50.2
GSMUA_Achr10P...	Banana	nucleus	45.0	40.75
GSMUA_Achr3P31370_001	Banana	nucleus	42.92	39.46
GSMUA_Achr3P03540_001	Banana	nucleus	59.58	35.57
GSMUA_Achr7P13980_001	Banana	nucleus	52.08	33.97
GSMUA_Achr5P06660_001	Banana	mitochondrion, plastid	58.33	29.72
TraesCS3B01G164500.1	Wheat	nucleus	50.83	27.11
TraesCS3D01G146900.1	Wheat	nucleus	50.83	26.87
TraesCS3A01G140100.1	Wheat	nucleus	50.83	26.7
Zm00001d008919_P001	Maize	nucleus, plastid	45.0	25.41
HORVU3Hr1G028240.5	Barley	extracellular, golgi, mitochondrion	50.83	20.68
Zm00001d039371_P001	Maize	mitochondrion	48.33	20.53
Os01t0213800-01	Rice	mitochondrion	48.75	20.21
GSMUA_Achr2P12990_001	Banana	nucleus	29.17	18.52
OQU86111	Sorghum	plastid	48.33	18.5
GSMUA_Achr4P31520_001	Banana	nucleus	29.17	18.42
GSMUA_Achr5P02530_001	Banana	nucleus	27.92	17.54
GSMUA_Achr6P27420_001	Banana	nucleus	21.67	17.39
GSMUA_Achr4P22960_001	Banana	nucleus	27.5	17.28
GSMUA_Achr7P01160_001	Banana	nucleus	27.08	17.02
GSMUA_Achr4P32850_001	Banana	nucleus	22.92	16.04
GSMUA_Achr2P21050_001	Banana	mitochondrion	14.17	13.03
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	16.67	12.12
GSMUA_Achr2P22480_001	Banana	cytosol	16.25	12.04

Protein Annotations

MapMan:15.5.19	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr6G14430_001	EnsemblPlants:GSMUA_Achr6P14430_001
EnsemblPlants:GSMUA_Achr6T14430_001	InterPro:IPR017887	UniProt:M0T6Z1	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF13	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0002960844	SEG:seg	:

Description

TCP family transcription factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G14430_001]

Coordinates

chr6:+:9566501..9567589

Molecular Weight (calculated)

25922.4 Da

IEP (calculated)

9.345

GRAVY (calculated)

-0.573

Length

240 amino acids

Sequence
(BLAST)

001: MGEGQNHHGG LGFRQLAVHD RHQQRLAQPR SGFGKLRGAG GEILEEHGGS IVRSTGQKDC HSKVCTAKGP RDRRVRLSAH TAIQFYDVQD RLGYDRPSKA
101: VDWLMKNAKA VIDQLAEVPA WTPTSTLTAA ITSTSRVPPP SNQSPVAEPD QRMAPWNVAE TSDGVGHGGF PFSVPPPQAV PTHSVLCPSQ LFSQRGPLQS
201: SNSPSVHSWA EPMAANAEIQ MHPGLHHSVS SSTFQHGFRA

Best Arabidopsis Sequence Match ( AT3G15030.1 )
(BLAST)

001: MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH

Arabidopsis Description

TCP4TCP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.