Factsheet for HORVU3Hr1G028240.5

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, extracellular

Predictor Summary:

plastid 1
extracellular 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, mitochondrion
Any Predictor:	extracellular, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	extracellular
TargetP:	mitochondrion
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G003440.12
HORVU4Hr1G010080.2
HORVU4Hr1G037480.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31070.1	HORVU4Hr1G003440.12	AT2G22840.1	21245844
AT2G31070.1	HORVU4Hr1G010080.2	AT2G22840.1	21245844
AT2G31070.1	HORVU4Hr1G037480.5	AT2G22840.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G164500.1	Wheat	nucleus	74.58	97.78
TraesCS3D01G146900.1	Wheat	nucleus	74.75	97.14
TraesCS3A01G140100.1	Wheat	nucleus	73.9	95.4
Os01t0213800-01	Rice	mitochondrion	77.97	79.45
Zm00001d039371_P001	Maize	mitochondrion	73.22	76.46
Zm00001d008919_P001	Maize	nucleus, plastid	53.9	74.82
OQU86111	Sorghum	plastid	74.58	70.18
GSMUA_Achr10P...	Banana	nucleus	24.75	55.09
GSMUA_Achr10P...	Banana	nucleus	23.05	54.62
VIT_19s0014g01680.t01	Wine grape	nucleus	34.41	51.01
GSMUA_Achr6P14430_001	Banana	nucleus	20.68	50.83
KRH27317	Soybean	nucleus	31.19	48.81
PGSC0003DMT400032269	Potato	nucleus	33.05	48.75
Solyc07g062680.1.1	Tomato	nucleus	32.88	48.5
GSMUA_Achr3P03540_001	Banana	nucleus	32.54	47.76
KRH26201	Soybean	nucleus	31.69	47.1
KRH55125	Soybean	nucleus	30.85	46.55
GSMUA_Achr5P06660_001	Banana	mitochondrion, plastid	36.78	46.07
KRH21998	Soybean	nucleus	30.68	46.06
Bra021586.1-P	Field mustard	nucleus	26.78	45.14
AT3G15030.1	Thale cress	nucleus	31.69	44.52
Bra001579.1-P	Field mustard	nucleus	30.68	44.47
KRH27017	Soybean	nucleus	25.76	44.31
KRH22307	Soybean	nucleus	25.76	44.19
Bra027284.1-P	Field mustard	nucleus	30.0	43.6
AT1G53230.1	Thale cress	nucleus	28.47	42.97
Solyc12g014140.1.1	Tomato	nucleus	28.64	42.89
PGSC0003DMT400039786	Potato	nucleus	30.51	42.76
KRH25697	Soybean	nucleus	20.85	42.27
Bra030952.1-P	Field mustard	nucleus	24.07	41.16
Solyc07g053410.2.1	Tomato	cytosol	16.95	40.98
VIT_12s0028g02520.t01	Wine grape	nucleus	20.85	40.07
PGSC0003DMT400024329	Potato	nucleus	20.85	39.55
Solyc10g018710.1.1	Tomato	nucleus	11.02	38.01
KRH55819	Soybean	nucleus	21.36	37.84
Solyc05g012840.1.1	Tomato	nucleus	14.24	37.67
Bra018280.1-P	Field mustard	nucleus	22.03	37.25
AT2G31070.1	Thale cress	nucleus	22.71	37.12
Solyc11g045640.1.1	Tomato	nucleus	12.2	32.88
Solyc05g032780.1.1	Tomato	nucleus	11.69	32.55
PGSC0003DMT400059117	Potato	nucleus	17.29	30.54
HORVU3Hr1G072670.2	Barley	nucleus	12.03	30.34
Solyc02g077250.2.1	Tomato	nucleus	17.29	28.81
VIT_10s0003g00870.t01	Wine grape	nucleus	18.64	28.8
HORVU0Hr1G006890.2	Barley	cytosol	10.0	27.44
HORVU5Hr1G008340.2	Barley	nucleus	12.37	24.75
HORVU5Hr1G103400.1	Barley	nucleus	16.61	24.5
HORVU3Hr1G073830.1	Barley	nucleus	11.02	23.38
HORVU2Hr1G060120.1	Barley	nucleus	16.27	23.3
HORVU1Hr1G077080.1	Barley	nucleus	10.51	21.23
PGSC0003DMT400068478	Potato	nucleus	17.46	19.77
HORVU5Hr1G061270.1	Barley	nucleus	8.64	18.68
Solyc10g008780.1.1	Tomato	nucleus	17.63	17.87
HORVU5Hr1G000490.1	Barley	nucleus	8.64	17.17
HORVU4Hr1G007040.1	Barley	nucleus	10.17	16.81

Protein Annotations

MapMan:15.5.19	UniProt:A0A287KJQ2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:HORVU3Hr1G028240
EnsemblPlants:HORVU3Hr1G028240.5	InterPro:IPR017887	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF66
SignalP:SignalP-noTM	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000B469C03	SEG:seg	:

Description

No Description!

Coordinates

chrchr3H:+:124687758..124690172

Molecular Weight (calculated)

62153.3 Da

IEP (calculated)

6.899

GRAVY (calculated)

-0.675

Length

590 amino acids

Sequence
(BLAST)

001: FFFSWFFLFL FPPSYGIRRA GWTRIGAAAA AVAEAKLQPG DLDPRHHHRG PHGGDGAGGG GGGGGGGGGG QQEAADEEQQ QQQQQQHHHY RLLQLHQEVQ
101: QDQEPPPAPV FQLSHLQAAS VRQPGSSAEY ALLAPMGDAG QSHSHHHHGL QTQLLSFGGA GNHHHHMHQF TAQAQPPPAS QTRARGGRGG EMVPATPARV
201: RGGGGGEIVA VQGGHIVRST GRKDRHSKVC TARGPRDRRV RLSAHTAIQF YDVQDRLGYD RPSKAVDWLI KNAKDAIDNL DTLPAWQPTA VAPAASNAAA
301: PPSSSTQPDS ADNSDDQAQA ITIAHSSFDF AGSGGAGGAT GGISFLPPSL DSDSIADTIK SFFPMGGTAG GEPSSSTVAA HSSAMGFQGY TPDLLSRTGS
401: QSQELRLSLQ PLPDPMFHHH HQQQEQHRSD GHDGNGTAQQ ALFPGATSYS FGGGGAMWAE QAPSQRMMPW NVPDPGGGST GGYLFNVSQQ AAHMQAALSG
501: QSQFFFQRGP LQSSNQPSDR GWPETVEADD NNPMQQQHHQ GGLNPSVSAI GFGPGVSFSG FRVPARMQGN EEHSGGNGDK PPSVSSASRH

Best Arabidopsis Sequence Match ( AT3G15030.2 )
(BLAST)

001: MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH

Arabidopsis Description

TCP4TCP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.