Factsheet for Solyc10g008780.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068478	Potato	nucleus	79.73	89.06
Solyc05g012840.1.1	Tomato	nucleus	21.48	56.05
Solyc10g018710.1.1	Tomato	nucleus	15.98	54.39
Solyc05g032780.1.1	Tomato	nucleus	18.73	51.42
Solyc11g045640.1.1	Tomato	nucleus	19.24	51.14
Solyc02g077250.2.1	Tomato	nucleus	27.84	45.76
GSMUA_Achr8P19990_001	Banana	nucleus	13.92	33.61
Solyc02g065800.1.1	Tomato	cytosol, plastid	7.9	32.39
Solyc07g053410.2.1	Tomato	cytosol	12.71	30.33
Solyc12g014140.1.1	Tomato	nucleus	18.04	26.65
Solyc07g062680.1.1	Tomato	nucleus	16.49	24.0
TraesCS3B01G164500.1	Wheat	nucleus	17.87	23.11
TraesCS3D01G146900.1	Wheat	nucleus	17.7	22.69
TraesCS3A01G140100.1	Wheat	nucleus	17.7	22.54
Zm00001d043423_P001	Maize	nucleus	16.32	21.89
KXG33398	Sorghum	nucleus	16.84	21.73
Os01t0755500-01	Rice	cytosol, mitochondrion	16.15	21.08
Zm00001d008919_P001	Maize	nucleus, plastid	15.12	20.71
Solyc02g089020.1.1	Tomato	nucleus, plastid	9.28	19.01
Solyc06g069460.1.1	Tomato	plastid	8.93	18.7
Solyc03g045030.1.1	Tomato	nucleus	5.84	18.58
HORVU3Hr1G028240.5	Barley	extracellular, golgi, mitochondrion	17.87	17.63
Os01t0213800-01	Rice	mitochondrion	17.53	17.62
Zm00001d039371_P001	Maize	mitochondrion	17.01	17.52
Solyc08g048370.2.1	Tomato	cytosol	9.79	17.48
Solyc08g048390.1.1	Tomato	nucleus	10.82	16.28
Solyc03g115010.1.1	Tomato	plastid	9.45	16.13
OQU86111	Sorghum	plastid	17.01	15.79
Solyc02g089830.1.1	Tomato	cytosol, nucleus, plastid	6.36	15.35
Solyc04g006980.1.1	Tomato	nucleus	9.11	14.13
Solyc03g119770.2.1	Tomato	nucleus	8.25	13.87
Zm00001d012725_P002	Maize	plastid	16.49	13.75
Solyc05g009900.1.1	Tomato	nucleus	8.08	13.31
HORVU0Hr1G006890.2	Barley	cytosol	4.47	12.09
Solyc06g069240.1.1	Tomato	nucleus	7.73	11.08

Protein Annotations

MapMan:15.5.19	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	UniProt:K4CY55
PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF41	EnsemblPlantsGene:Solyc10g008780.1	EnsemblPlants:Solyc10g008780.1.1
InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000276BB95	SEG:seg	:	:

Description

No Description!

Coordinates

chr10:+:2855509..2857257

Molecular Weight (calculated)

66233.1 Da

IEP (calculated)

8.248

GRAVY (calculated)

-1.078

Length

582 amino acids

Sequence
(BLAST)

001: MKHHLEVSNE NEDKSSSSSQ QDDDDDENKD EFFQEILQSD YQHMQQWPNY FTPPSSTLVP KKQNNTQCPS HKEETKKVSL KRKPKRAKQD VMEVHGSRIV
101: RATGRKDRHS KVSTATGPKD RRVRLSPNTA IQFYDVQDRL GYDRPSKAID WLIKEAQRAI NALEKAPFQV FSNKINSTNK ALNVRNVENE VGQFALEQSW
201: SADKKTELEE LARRSSKLNA TVQYSTDQFP EGCYKEQSSK VCQANATQIV NSSANGSKIQ SFCQIQTHPQ AHLHSQTKRQ SPNDAKIQSF CEYQTHPQSH
301: FHSQTKKQSP NVAKTLSFCE MQTPSQGHFH SQTKNQPTND AKIQSFCQLQ THPQSHFQSE TKNQSPNVAK IQSFGELQTT PQSHFHSQTQ KQSTNDAKIQ
401: SFCELQTHPQ GHFHSETKNQ SPNVAKVQSF CELQTHPQSH FQSETKKQSP NVAKIQSFCE LQTPPLSHFQ SETKNQSTQL GNFFSFQSCH QNEPISFSGD
501: HHHGFSFSPQ NFPTVLGQNQ MFNYQREPLQ STSNFPQTIS YSNNIGFAND GLLGLSSAPI TQQQQQQDEQ GSISTTLLHY QD

Best Arabidopsis Sequence Match ( AT2G31070.1 )
(BLAST)

001: MGLKGYSVGE GGGEIVEVQG GHIIRATGRK DRHSKVFTSK GPRDRRVRLS AHTAIQFYDV QDRLGYDRPS KAVDWLIKKA KTAIDKLELG ETTTTTTRQE
101: PVNTKPESPT LVFQRENNDQ TQFVAANLDP EDAMKTFFPA TTTTNGGGGT NINFQNYPHQ DDNNMVSRTT TPPPNLSQDL GLSLHPFQGN NNTVVVPETN
201: NFTTTHFDTF GRISGWNHHD LTMTSSSSSE HQQQEQEERS NGGFMVNHHP HHHHHQPSMM TLLNSQQQQV FLGGQQQQQQ RGTLQSSLFP HSFRSWDHHQ
301: TTSDHHHHQN QASSMFASSS QYGSHGMMMM QGLSFPNTTR LLHGEEATQP NSSSSPPNSH L

Arabidopsis Description

TCP10Transcription factor TCP10 [Source:UniProtKB/Swiss-Prot;Acc:O82277]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.